Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2365 ATGGCCCCTGTTACCCAACTTCCCTGTGACTGCGACGGTGTTTGTATGGCTTGCAAGGTGAAGCCAGAAGAGGCAGAGAAGCTGGCATGTAAGACTTGCGCCACCCAATGGCATGTTCTTTGTCTTTCTTCTCCTCCGGCAACAATGGCGGATTCTGTTCATTGGGAATGTCCTGACTGTTCTTCCCTACCCTCTGACATTCCTATGAACAAGGTGAAGACATCGCAAGATGAAGGTGGAAATTTGATATCTGCAATTCGAGCCATAGAGGCTGATAGGTCTCTCACAGAGACTGAAAGAGCTAGGAAGCGTCAACGGCTTCTGAGTCGAAAGGCCGTTTTGGAAGAGGACAAGAATGGAGAATGTGAGGAAAGTGTCATCCTGAAAATTCTCAATGGTATACTTAACTGCTCTTTTTGTCTCCAACTACTGGAGAGGCCTGTCACGACACCGTGCGGGCATAATTTTTGCCTTAAGTGCTTCCAAAAATGGACGGGGCAGGGCAAATATACATGTGCAAAATGTCGCTCTATTATCCCCCACAAAGAGGCAAGTAATATTCGCATTAATTCTGCTCTCGTGAGTGCCATTCGTATGGCAAAATCATCCAAAATGAATGCAGCTGGAGAAACTTCAAAGATCTACCAGTTTGTACACAACCAAGATAGACCAGACAAAGCATACACTACGGAGAATTCCAAAAAGAATGGCAACGCAAATGCTGCGAGTGGAAAAATATTTGTAACGGTGCCTCAGGATCATTTTGGTCCAATCCCAGCTGAGAATGATCCTGTGAGAAATCAAGGTGTGCTTGTTGGTGAATGCTGGGCAAATAGGTATGAATGTCGTCAATGGGGTGTCCACTTCCCACATGTGAGTGGGATTGCTGGCCAATCAAATTATGGTGCACAATCTGTTGTTCTTTCTGGTGGTTATATTGACGATGAAGATCATGGAGAATATTTTATTTACACTGGAAGTGGAGGAAGAGATCTAAGCGGCAACAAACGCACAAGTAAAACGCAGTCTTTTGATCAAAAGTTTGTGAAGTATAACATGGCGCTTAAAGTAAGTTGTCTAAAGGGGTACCCTGTCAGAGTATTAAGATCTCATAAAGAAGAAAGGTCCTCCTATGCCCCCCAAGAAGGTACAAGATACGATGGAATTTATAGAATTGAAAAATGTTGGATTAGACAAGGAGTGCAGGGCTTCATGGTTTGCCGTTTTTTGTTTGTTAGATGTGAAAATGAACCCGCTCCATGGACTAGCGATGACCATGGTGATCGCCCGAGACCATTACCAGAAATCCGCGAGTTGGAGGAGGCCATATCCATTGTTGAGAGGGAAGAAGCTCCATCTTGGGGTTTCGATGAGCAAGATTCTCGTTGGAAGTGGAAGAAACCGCCACCTCCAAGCAAAAAGAAAGTAAAAAGAATGGATCCAGAAGAGATCGAAAATACAAGAAAAGAAATAATAAAATCCAAAAGTATATCACTTAGAGAGAGCTTATTAAAAGGATTGAAGTGCCTCAAATGTGGGCAAGTTTTGGTCTCTCCTGTAACCACCCCATGTGCCCACAATTTTTGCAAGTCATGTCTAGAAGAAGCATTCGCTGGCGTACCTTTCATGAAAGAGAGAAACAGAGGCGGAAGGTCACTTCGTTCACAAAAGAATGTGCGAAAGTGTCCTAATTGCCCCACCGATATTTCAGATTTTCTTCAGAATCTTCAGATTAACAGGGAGTTGATGGATTTGATTGATTCACTGAACGAGGAGGTTAAAGAGAAAAGTGATGAAGAGGGCTTGATCAGTGAGAATTCCGGCGGAGAAACGGATGTTGAGAAAGATGAAGACATTGATTCAGATGAATGCAACGAGGAAAATGAGCCAGAGCAGTAA 1899 0.436 MAPVTQLPCDCDGVCMACKVKPEEAEKLACKTCATQWHVLCLSSPPATMADSVHWECPDCSSLPSDIPMNKVKTSQDEGGNLISAIRAIEADRSLTETERARKRQRLLSRKAVLEEDKNGECEESVILKILNGILNCSFCLQLLERPVTTPCGHNFCLKCFQKWTGQGKYTCAKCRSIIPHKEASNIRINSALVSAIRMAKSSKMNAAGETSKIYQFVHNQDRPDKAYTTENSKKNGNANAASGKIFVTVPQDHFGPIPAENDPVRNQGVLVGECWANRYECRQWGVHFPHVSGIAGQSNYGAQSVVLSGGYIDDEDHGEYFIYTGSGGRDLSGNKRTSKTQSFDQKFVKYNMALKVSCLKGYPVRVLRSHKEERSSYAPQEGTRYDGIYRIEKCWIRQGVQGFMVCRFLFVRCENEPAPWTSDDHGDRPRPLPEIRELEEAISIVEREEAPSWGFDEQDSRWKWKKPPPPSKKKVKRMDPEEIENTRKEIIKSKSISLRESLLKGLKCLKCGQVLVSPVTTPCAHNFCKSCLEEAFAGVPFMKERNRGGRSLRSQKNVRKCPNCPTDISDFLQNLQINRELMDLIDSLNEEVKEKSDEEGLISENSGGETDVEKDEDIDSDECNEENEPEQ 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2365 632 SMART PHD_3 14 61 IPR001965 -
Mibi08g2365 632 MobiDBLite consensus disorder prediction 611 632 - -
Mibi08g2365 632 SMART G9a_1 260 417 IPR003105 -
Mibi08g2365 632 Pfam RING-type zinc-finger 509 563 IPR027370 -
Mibi08g2365 632 SUPERFAMILY FYVE/PHD zinc finger 7 66 IPR011011 -
Mibi08g2365 632 MobiDBLite consensus disorder prediction 591 632 - -
Mibi08g2365 632 ProSiteProfiles Zinc finger RING-type profile. 137 176 IPR001841 -
Mibi08g2365 632 Pfam zinc finger of C3HC4-type, RING 137 175 - -
Mibi08g2365 632 Gene3D - 236 432 IPR036987 -
Mibi08g2365 632 MobiDBLite consensus disorder prediction 459 481 - -
Mibi08g2365 632 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 236 431 - -
Mibi08g2365 632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Mibi08g2365 632 SUPERFAMILY RING/U-box 130 197 - -
Mibi08g2365 632 ProSitePatterns Zinc finger RING-type signature. 524 533 IPR017907 -
Mibi08g2365 632 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Mibi08g2365 632 ProSiteProfiles YDG domain profile. 265 413 IPR003105 -
Mibi08g2365 632 ProSiteProfiles Zinc finger RING-type profile. 509 565 IPR001841 -
Mibi08g2365 632 Pfam SAD/SRA domain 267 416 IPR003105 -
Mibi08g2365 632 Coils Coil 579 599 - -
Mibi08g2365 632 SUPERFAMILY RING/U-box 504 590 - -
Mibi08g2365 632 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 4 598 IPR045134 -
Mibi08g2365 632 SMART ring_2 509 565 IPR001841 -
Mibi08g2365 632 SMART ring_2 137 175 IPR001841 -
Mibi08g2365 632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 207 IPR013083 -
Mibi08g2365 632 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 464 596 IPR013083 -
Mibi08g2365 632 SUPERFAMILY PUA domain-like 240 437 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2365 Mibi-ChrMibi08 41413889 41418248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2365 1 601 C2H2 Transcription Factor Family AT5G39550 58.581 0.0 710