LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi08g2335	ATGCATCACCTACCTCGTTTTTTCGGTCACAGGAAGCAAAACAAGGGCATGAACCCTAATAAACTCCGAACAAAACCTCGCCTCGATCGCAGTAATGCCGTCAAATACGTCGAGTATGATTCCGGGTCGTCTCTAGACAACTCGTGTGGGTCCCTCAACAATCGATCGACTGAGTTCAGTGATCGAACCAGCTTCCGAATTGCCGGGACCGAGGGCGAGATTGATCGCATATGTAGGGATTTAGGGTTTTCCGGGCCTGATGACTTTTCCATTCCACCTGCAGCTTGGGAGGCTATGAAAATCAGATCCTCTTCAGAAATCACACCAATTGTGAAGTTGAACGAGGAATTACAAGACGAGAGTTCGGTAGTGGATGACTTAGGTGACAAATTCGAAGACAGGGTTACAGTTAGATGTATAACTGAGTCAACTCAAGATGAGCCTGCTGAGACTAGTGGGTGCTGCATTGCTGGTAATGGTATTAGAGGAATTCGTCCACCGATGCTAAAGCCACCGCCTGGGACGAGGCATACGGTAATCGATGATAACACTTGCTCTACTTGGGACATTTTAAGGGATTTAGCTCCGGAAGTTGCAGGACATTCTTTAGGAAATCCAAGAGAAGCAGAGCAAGGGGAAGTAAATAAAGAGGAAAAAGAAGAAGCGGTGGTTGAAAGGAAGGCAAGTCTGAGAGAAGAAGAGGATGTTAATGCAACTAGGATTGCGGAGATTGTTGCTCAGTTTTCGGCATCGTGTTCGTTCACTACGTCAAACGAGGATGATTCTTCTAGCACTTTCACGGATCCTCCATCGAATAACATATCTCCCAACGTGAGGTTCAAGCGAAGTATTACGAACTGGGAAAAGGGCGAGCTTTTGGGACGTGGTTCGTTTGGGTCAGTCTATGAGGGAATTTCTGAAGATGGATTCTTTTTTGCTGTAAAGGAAGTTTCACTCCTTGATCATGATGACCAGGGAAGGCAAAGTGTCTATTGCCTGGAGCAGGAAATTGCTCTTTTGAGTCAGTTTGAACACGAGAATATCGTTCAATACTATGGAACAGAAATGGATCAATCAAAACTGTATATTTTTCTCGAGCTTGTGACCAAAGGTTCCCTCGCAAATCTGTATCGGCGGTACAATCTTCGAGACTCCCAAGTATCTGCCTACACAAGACAGATTCTGCATGGTTTAAAGTATCTGCATGATCGAAATGTGATACACAGGGATATTAAATGTGCAAATATATTGGTAGATGCAAATGGATCTGTCAAACTTTCGGATTTTGGACTGGCAAAGGCAACCAAATTGAATGATATTAAGTCGTGTAAGGGGACAGCATTCTGGATGGCACCTGAGGTTGTGAAAGGAAAGAATCAAGGTTATGGACTTCCGGCTGATATATGGAGTCTGGGGTGCACTGTGCTTGAGATGTTAACAGGCCAAATTCCATACTCTCATTTGGAATGTATGCAGGCTTTGTTTAGAATTGGAAAGGGTGAGCGACCTCTTGTTCCTGACTCTCTTTCAAAAGATGCACAAGATTTTATCCTGCAGTGTCTTCAGGTCAATCCTGATGATCGTCCCTCTGCTGCTCAGCTTTTGAACCATCCATTTGTCCAAAGGCCACTTGCCACATTCTCTGGCTCTGCATCTCCTTATATACCTTCCAGAAGGGGTTGA	1683	0.4474	MHHLPRFFGHRKQNKGMNPNKLRTKPRLDRSNAVKYVEYDSGSSLDNSCGSLNNRSTEFSDRTSFRIAGTEGEIDRICRDLGFSGPDDFSIPPAAWEAMKIRSSSEITPIVKLNEELQDESSVVDDLGDKFEDRVTVRCITESTQDEPAETSGCCIAGNGIRGIRPPMLKPPPGTRHTVIDDNTCSTWDILRDLAPEVAGHSLGNPREAEQGEVNKEEKEEAVVERKASLREEEDVNATRIAEIVAQFSASCSFTTSNEDDSSSTFTDPPSNNISPNVRFKRSITNWEKGELLGRGSFGSVYEGISEDGFFFAVKEVSLLDHDDQGRQSVYCLEQEIALLSQFEHENIVQYYGTEMDQSKLYIFLELVTKGSLANLYRRYNLRDSQVSAYTRQILHGLKYLHDRNVIHRDIKCANILVDANGSVKLSDFGLAKATKLNDIKSCKGTAFWMAPEVVKGKNQGYGLPADIWSLGCTVLEMLTGQIPYSHLECMQALFRIGKGERPLVPDSLSKDAQDFILQCLQVNPDDRPSAAQLLNHPFVQRPLATFSGSASPYIPSRRG	560

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi08g2335	560	Coils	Coil	207	227	-	-
	Mibi08g2335	560	MobiDBLite	consensus disorder prediction	200	221	-	-
	Mibi08g2335	560	MobiDBLite	consensus disorder prediction	1	25	-	-
	Mibi08g2335	560	Gene3D	Transferase(Phosphotransferase) domain 1	283	552	-	-
	Mibi08g2335	560	ProSiteProfiles	Protein kinase domain profile.	287	540	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi08g2335	560	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	406	418	IPR008271	GO:0004672\|GO:0006468
	Mibi08g2335	560	SUPERFAMILY	Protein kinase-like (PK-like)	261	547	IPR011009	-
	Mibi08g2335	560	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	77	553	-	-
	Mibi08g2335	560	SMART	serkin_6	287	540	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi08g2335	560	Pfam	Protein kinase domain	288	540	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi08g2335	560	FunFam	Mitogen-activated protein kinase 1, putative, expressed	285	552	-	-
	Mibi08g2335	560	ProSitePatterns	Protein kinases ATP-binding region signature.	293	315	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi08g2335	Mibi-ChrMibi08	41094413	41101569	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi08g2335	1	544	MAP Kinase Kinase Kinase	AT4G08500	48.270	4.55e-165	481

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Mibi08g2335		Pkinase	1.4e-69	CL0016