Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2310 ATGGGTCGCGTTAAATTGGAGATTAAGAGAATAGAGAATACCATAAATCGTCAGGTGACATTCTCAAAACGTAGAAATGGGCTCATCAAGAAAGCCTATGAGTTATCCATTCTTTGCGACATTGATATTGCTCTCATAATGTTCTCTCCTTCAGGCCGTGTCAGTCATTTTTCTGGCAGACGAAGAATTGAAGATGTATTCACGCGTTACATCAATCTCCCAGATCAAGAAAGAGATGGCGCCATAACATTTCCAGAGCAACCCTACCGCAGGAATATTCAGAACAAAGAGTATCTGTTGAGGACCCTCCAACAATTGAAAAGTGAAAATGACATTGCTCTTCAGCTCGCCAATCCGGGAGACATCAACTCGGAGATTGAAGAGCTGCAACAAGAAGTGGGCAGGCTACAGCAACAGCTTCAAATGGCCGAAGAACAGATACGGATATATGAACCGGATGCGATGAAGATGACATCAACGGGGGAGCTGGAATCAAGCGAGAAGAATCTCATGGATACGCTGACACGTGTCATGCAGAGGAAAGAGTATCTTATGAGCAAGCACGTGTCGTCATCATACGATCCATCGGGGATAGCGTCATTGGAGAACGTTGCGTGGTTGGGTGAGGGTGGCGACAGCCATTCCCACATGTTCGACCCCTCCTCGGTGTCGTTGGATCCGCTGCCATCGACGGTGTACGAGGCGTTCTCGCAGGGTGGGGCCACCTCCAACGTGGAGTGCCACGTGGGCAGCGAAAGCAACGATGGGAATATGCAGGCGTGGCCTCAGGGCTACAGTATGTACCCCTCCATGCCGCAGGATCTGGTCGCCGCAGACATGCAGGAGATGATGCAGCCGCAGCTTAACAATGTGGGCCCCATCCCCTCTCACTTTGACTTTGACTCCAAAGCTCCCCATTGA 921 0.4995 MGRVKLEIKRIENTINRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRVSHFSGRRRIEDVFTRYINLPDQERDGAITFPEQPYRRNIQNKEYLLRTLQQLKSENDIALQLANPGDINSEIEELQQEVGRLQQQLQMAEEQIRIYEPDAMKMTSTGELESSEKNLMDTLTRVMQRKEYLMSKHVSSSYDPSGIASLENVAWLGEGGDSHSHMFDPSSVSLDPLPSTVYEAFSQGGATSNVECHVGSESNDGNMQAWPQGYSMYPSMPQDLVAADMQEMMQPQLNNVGPIPSHFDFDSKAPH 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2310 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi08g2310 306 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Mibi08g2310 306 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Mibi08g2310 306 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi08g2310 306 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi08g2310 306 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi08g2310 306 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi08g2310 306 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 205 - -
Mibi08g2310 306 Coils Coil 126 146 - -
Mibi08g2310 306 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mibi08g2310 306 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi08g2310 306 FunFam MADS-box transcription factor 41 13 92 - -
Mibi08g2310 306 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2310 Mibi-ChrMibi08 40839355 40842080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2310 1 305 Type I MADS-box Gene Family AT1G22130 54.354 3.23e-109 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi08g2310 SRF-TF 3.9e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2310 08 40839355 40842080 Mibi08g2310 08 40839355 40842080 ECH