Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2252 ATGGCGAAAATACACAGGAAACTCTTCCCAACATCATCCAATATAAACCAAACACAAGATTGTCCTGAATTTTGCGACCCAGCTTGCCCTTATAGCTGTTATTATTTCCCTGACTACTACTTCCCTCCGCCGCCGCCGCCTCCTCCGCCTCCTTTTCCGGCCACCGATCATTCCAGTTCCGGCACTCATATCTCCTCCTACATCATCATTCTTGCTTCTTTGTTTTCCGCCATTTTTATCCTCCTAGGTCTGTACGTGATCAAAACCAAGTGTTACTCTAGTTGGTGTGGCTGGCGACACAATGGAACTCAATCAGAGGCATCAGACCAACAGTTTCTTGATGAGAACCAAGTTGATCACCCCGTCTGGTTCATCACCACTTCTGGTTTACAACAGACGATTATAAATTCCATCACAGTTTGTAAGTATAAAAGGGGTGAAGGATTGATCGAAGGAACTGAATGTTCTGTGTGTTTGAATGAATTTCGAGAGGGTGAAACCTTGAGATTATTGCCCAAGTGTAGCCATGCCTTTCACATACCCTGTATTGACACTTGGTTACGTTCTCATACTAATTGTCCTCTCTGTCGAGCTGGGATCGTCTCCAACAACGCCAGAACTGAGGCTTCCGTGTCAAATTTGGCTTCAACGGAGATAAATTCTGAGACTTCACGTAGGAACCAAGAGATTCATGCTCAGAATTCGCCAAATGATGGTGAAGTAAGAAATGATATGGTGGTAACTGCAAATGGGGCATCTGGAAATAGAGCTGGAACAGGGGAAATTACTCAAGTTTTGAATGATAATATGGTTTCAAAGGAGCACGCGAATGTTGTACTCAGTGATCCAAAAGAGCATCGTGGGGTTTTAGATGAAGGGAAGAGAATTATAAGGTCTATGTCTATGGATTCTCGAGTTGCAAATTCTTCTACTTCGGAACCTGAAGAAAGCCATTCGGTGTTTAAAGGAATTCGGCGTTCCTCTGTTACAAAATGTCTACACTTGAGCCCCGTTCCTATGAAGAGGTCGCTCTCTTGCAATGGAAGAATTCTATCTTCCAGAGGTCACAGGAATCTGCATATGAGCCTTCCTTATTAG 1098 0.4381 MAKIHRKLFPTSSNINQTQDCPEFCDPACPYSCYYFPDYYFPPPPPPPPPPFPATDHSSSGTHISSYIIILASLFSAIFILLGLYVIKTKCYSSWCGWRHNGTQSEASDQQFLDENQVDHPVWFITTSGLQQTIINSITVCKYKRGEGLIEGTECSVCLNEFREGETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRAGIVSNNARTEASVSNLASTEINSETSRRNQEIHAQNSPNDGEVRNDMVVTANGASGNRAGTGEITQVLNDNMVSKEHANVVLSDPKEHRGVLDEGKRIIRSMSMDSRVANSSTSEPEESHSVFKGIRRSSVTKCLHLSPVPMKRSLSCNGRILSSRGHRNLHMSLPY 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2252 365 PANTHER RING-H2 FINGER PROTEIN ATL16 50 328 IPR044600 GO:0016567|GO:0016740
Mibi08g2252 365 MobiDBLite consensus disorder prediction 217 241 - -
Mibi08g2252 365 SUPERFAMILY Formin homology 2 domain (FH2 domain) 42 51 - -
Mibi08g2252 365 MobiDBLite consensus disorder prediction 303 322 - -
Mibi08g2252 365 CDD RING-H2_PA-TM-RING 154 197 - -
Mibi08g2252 365 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Mibi08g2252 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 206 IPR013083 -
Mibi08g2252 365 MobiDBLite consensus disorder prediction 303 317 - -
Mibi08g2252 365 SMART ring_2 155 196 IPR001841 -
Mibi08g2252 365 SUPERFAMILY RING/U-box 148 202 - -
Mibi08g2252 365 FunFam RING-H2 finger protein ATL54 130 203 - -
Mibi08g2252 365 MobiDBLite consensus disorder prediction 217 242 - -
Mibi08g2252 365 Pfam Ring finger domain 154 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2252 Mibi-ChrMibi08 40257051 40258148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2252 3 201 C3H Transcription Factor Family AT1G72220 50.000 1.35e-63 206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2252 08 40257051 40258148 Mibi08g2252 08 40257051 40258148 ECH