Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2250 ATGGCCACCATTCTCCTCTCCCTCCTCCTCCTCCTCCTCCACCACCTTTCTCTCCCTTCCTTAGCACAGCCCACAGTTCCTCCTCCTCCCTCTCCTCAGGTCCGATTCGACAAATCCATGGCCATCGTCCTTGTCATCGTCGTCGTCGTCTTCTTCGCTTTAGGCTTCCTCTCCGTCTACTCTCGTCAATGCGCCGAACGACGATTTCGAGGAACCGACGACTTCCCCAGCGACCGCCACTCCCGTCGCGGCCTCGACCCCGAAATCATCAGAACTTTCCCCACCTTCGTATACTCCACCGTCAAGGGCCTTAAAATTGGGAAAAGCACTCTAGAATGCGCCGTCTGCTTGAACGAGTTTCAAGACCACGAAACGTTGCGTTTCATCCCCAAATGTAGTCATGTCTTCCACCCTGCTTGCATTGACCTCTGGCTATCATCTCACTATACCTGCCCTGTTTGTCGGGCCAACCTCGCTCCTAGGTCCGATGATGTCTCCTTCGTCTCCGTTCAGATTCCGGGATCTCCCTCCGAGTCCGACCACCAACAACACGTGGAAGATATGATCCAACATGATGAACAAGTATGTGAGCCATCCCCTAAGAATAATAACAGAGATATTATTAATGTGCTCCATCAGAATAATTGTACTAGTAGTAGTCCTTCACCGAGGTCAGGGATTTGGAGCTTGTTTCCACGATCACACTCGACGGGACACTCTCTGGTTTCGACGGCGGCGGATAGGGAGAGATATACTCTGAGGTTGCCGGAGGAGGTGAGGAGGGGGCTTATTATGAGGCCGGCTTTTGAGAGAATGAGTAGTGAGAGGAGTGGTTACAGGACTAGAAGTGTTGGGAGTGGTACTGGGGTTGGCCGCTTCGACCGGTTCAGGAGGGAGGGCCGGTCTGACTGGTGGCGCTTCATCCATAGGAATGCTTCCACGTCCAGAGAACGAAGCAGGAAGCCACATGATGATGCCATGCAAAACTTCCAAGAAAGATCAACGGATCGCTTATGCGCAGAGCAAAGTGAGGATTAG 1038 0.527 MATILLSLLLLLLHHLSLPSLAQPTVPPPPSPQVRFDKSMAIVLVIVVVVFFALGFLSVYSRQCAERRFRGTDDFPSDRHSRRGLDPEIIRTFPTFVYSTVKGLKIGKSTLECAVCLNEFQDHETLRFIPKCSHVFHPACIDLWLSSHYTCPVCRANLAPRSDDVSFVSVQIPGSPSESDHQQHVEDMIQHDEQVCEPSPKNNNRDIINVLHQNNCTSSSPSPRSGIWSLFPRSHSTGHSLVSTAADRERYTLRLPEEVRRGLIMRPAFERMSSERSGYRTRSVGSGTGVGRFDRFRREGRSDWWRFIHRNASTSRERSRKPHDDAMQNFQERSTDRLCAEQSED 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2250 345 Pfam Ring finger domain 112 155 IPR001841 -
Mibi08g2250 345 MobiDBLite consensus disorder prediction 313 345 - -
Mibi08g2250 345 SUPERFAMILY RING/U-box 107 161 - -
Mibi08g2250 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 161 IPR013083 -
Mibi08g2250 345 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Mibi08g2250 345 PANTHER RING FINGER DOMAIN-CONTAINING 24 162 - -
Mibi08g2250 345 SMART ring_2 113 154 IPR001841 -
Mibi08g2250 345 FunFam E3 ubiquitin-protein ligase ATL6 75 161 - -
Mibi08g2250 345 CDD RING-H2_EL5_like 112 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2250 Mibi-ChrMibi08 40218333 40219370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2250 1 307 Rapid Response to Elicitors AT3G05200 38.535 1.01e-54 182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2250 08 40218333 40219370 Mibi05g0153 05 1634584 1636957 CCT
Mibi08g2250 08 40218333 40219370 Mibi08g2250 08 40218333 40219370 ECH