Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2246 ATGGATGCTGATATTGTTGAAGTTTTTTGCGGATACGCTTGTAGTGTTATGCCCGTGAATTATTCTCTCTGTCCCGAGGATTTGCCTCATCCCAGTGGGGATCCATACTTCACTATGACAGTCATTAGAAATAAACTATACTATAAAGTTCCTCACATGGACCTTAATGGTGATAAGAGCACGACTGTTACCATCCCTATACGCAGGATCTCAAAGAACAGAATGCGTCTAATAACAGAAACCATGTTATCTGCTTTTGAAATCCCTGAACCTGATCACAACTCTATGGCAACCAAGATCTTGGATGTCGCAGACAACATGCTAAACGATACCCACAAGAACGACAAGATTCTAAACGTGGCTGTGCTTATTGACGTTCACATTTATTATCACCACAGTGATAACTATAATCAAGCTCTCGCGGCGTTGGGGGAACTTCAACATTATGATAATAATAATAATAATGGGTTAGTGCCTGCTAGTGATTCGTCCATTGAAGGGTTGGAAAGAGTAGAGCTTGAGCAGGTGCAAGGGTTGCCCCATTGTGTGATATGCTTGGGAGTTTTCAAGGTTGGCAGAGAAATTATTCGCATGCCTTGCTCACACTTCTTTCACAGAAATTGTATTGTTCACTGGCTTCATCGGAAGAATGAGTGTCCCTTGTGTCGTTTTGAGCTGCCTACCAGTGACCATTAA 696 0.421 MDADIVEVFCGYACSVMPVNYSLCPEDLPHPSGDPYFTMTVIRNKLYYKVPHMDLNGDKSTTVTIPIRRISKNRMRLITETMLSAFEIPEPDHNSMATKILDVADNMLNDTHKNDKILNVAVLIDVHIYYHHSDNYNQALAALGELQHYDNNNNNGLVPASDSSIEGLERVELEQVQGLPHCVICLGVFKVGREIIRMPCSHFFHRNCIVHWLHRKNECPLCRFELPTSDH 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2246 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 134 227 - -
Mibi08g2246 231 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
Mibi08g2246 231 Pfam Ring finger domain 181 223 IPR001841 -
Mibi08g2246 231 SMART ring_2 182 222 IPR001841 -
Mibi08g2246 231 CDD RING-H2_PA-TM-RING 181 223 - -
Mibi08g2246 231 SUPERFAMILY RING/U-box 181 228 - -
Mibi08g2246 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 229 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2246 Mibi-ChrMibi08 40195101 40195796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2246 131 230 C3H Transcription Factor Family AT3G02340 41.748 3.80e-16 74.7