Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2228 ATGGAATTTGAGGAGCACGACGAGCAAGATGACGACATCCACAACATCCCCGTCTCTCCTCCCTACCACTCCCTCCCCATCTCCAAATTAACCGTCTCCTCCGCCGACGCCGCCCCCTCCGCCGTCACTCCTCCCCGTAAATCTGACCCCGCCAGGTACCGTGAATGCCAAAAGAACCACGCCGTCAGCCTCGGCGCACACGCCGTCGACGGCTGCGGAGAGTTCATCCCTGCCGGAGAGGAAGGTACGCTCGACGCCCTAAAATGCGCCGCCTGTAATTGTCACCGGAATTTCCACCGTAAGGAGACGGATGGCGGCGAGATTACGCCGTACCAGCCTCCTCCTCCGCCGCCGCCGCCGCACCACTATCAGTACCACCACCAGCAGTATCCGCCGTACTACCGTGCTCCGCCGCCGCCGGCAGGGTACCTCCACCACCCTCTGTCGGCTCAGCCGATGGCGCTTCATCGGTCGTTCGCTCTGCCGGCGCCGGCGTCGATTAGAGACGAGGAGGATATGTCGAATCCGAGCAGCAGTGGCGGCGGCGGAAGCGGTGGCGGAGGAGGGAAGAAAAGGCACAGGACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGGAATTTGCGGAGAGGGTTGGGTGGAGAATTCAGAAGCATGATGAAGCTGCGGTGGAGCAATTCTGTTCTGAGAATTGTGTTAAGAGGCATGTGCTTAAGGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 762 0.5945 MEFEEHDEQDDDIHNIPVSPPYHSLPISKLTVSSADAAPSAVTPPRKSDPARYRECQKNHAVSLGAHAVDGCGEFIPAGEEGTLDALKCAACNCHRNFHRKETDGGEITPYQPPPPPPPPHHYQYHHQQYPPYYRAPPPPAGYLHHPLSAQPMALHRSFALPAPASIRDEEDMSNPSSSGGGGSGGGGGKKRHRTKFTAEQKEKMLEFAERVGWRIQKHDEAAVEQFCSENCVKRHVLKVWMHNNKNTLGKKP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2228 253 SUPERFAMILY Homeodomain-like 177 251 IPR009057 -
Mibi08g2228 253 MobiDBLite consensus disorder prediction 168 195 - -
Mibi08g2228 253 FunFam Zinc-finger homeodomain protein 2 179 251 - -
Mibi08g2228 253 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
Mibi08g2228 253 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 190 247 IPR006455 -
Mibi08g2228 253 MobiDBLite consensus disorder prediction 102 121 - -
Mibi08g2228 253 Gene3D - 175 250 - -
Mibi08g2228 253 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 52 102 IPR006456 -
Mibi08g2228 253 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 249 - -
Mibi08g2228 253 MobiDBLite consensus disorder prediction 1 52 - -
Mibi08g2228 253 Pfam ZF-HD protein dimerisation region 52 103 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2228 Mibi-ChrMibi08 40052124 40052885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2228 1 249 ZF-HD Transcription Factor Family AT4G24660 51.172 9.67e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mibi08g2228 ZF-HD_dimer 1.2e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2228 08 40052124 40052885 Mibi05g0472 05 4479246 4479989 CCT
Mibi08g2228 08 40052124 40052885 Mibi08g2228 08 40052124 40052885 ECH