Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2208 ATGCTTCCTTTCAGAAGTTTCTATGGTTTTGAGAGCTGGTTAGATCAGAGTTCGTCTTCTCAAGAACCCAACTCCTCCATCAAATCCATGAAATTAGATAAAGGGAAACCAACAACTCTGAACCTCGCATCAAAATCTGAAAGGAAATCAATGGAAGCATGTAAAAGTCACAGAGAAGCAGAGAGAAGACGCAGGCAGAGAATCAACACCCACCTCTCCACTCTACGTTCTCTCCTCCCTAACACCGTAAAGTCAGATAAGGCTTCGTTACTTGCGGAGGTTGTCCGACACGTCAGAGACCTAAGGAAACAGGCCGATGACGTGGCAGGCCGACAAGACGGAGGCATGCCGGGAAGCACTATCACCAGAGAATCCGGGTCGGATTTTGGAGAGTCGGGTCGGTGGGCTTTCCCGGGAGAGTCCGACGAGGCAACAGTGAGTTACTACGACGGAGGTGGGGAGAGGAAAATGGCGAAAGCCACGGTCTGCTGCGAGGAACGGCCCAACCTGAACCGTGATTTAGAGGAGGCGATCCGGTCGGTTCGGGCTAAGGCGGTTCGGGCCGAGATGATGACTATTGGTGGGCGGACCAAGAGTGTGGTGATTGTCCAATGGACTGGTGGTGGTGAAGGGGAGGCTGGTGCATTGGAACGGGCTTTGAAGGCTGTCGTGGAGAATCAGGGCCTTGTGGGCCCTAGACTGGGCCGAATGTCGTTGGGCCACAAACGGGCCCGACATTGTTATGGCCTGCCTAATGAGGGCGAAACCGGATTCTTGTTGAGAACTGCTGATATGTAG 798 0.5313 MLPFRSFYGFESWLDQSSSSQEPNSSIKSMKLDKGKPTTLNLASKSERKSMEACKSHREAERRRRQRINTHLSTLRSLLPNTVKSDKASLLAEVVRHVRDLRKQADDVAGRQDGGMPGSTITRESGSDFGESGRWAFPGESDEATVSYYDGGGERKMAKATVCCEERPNLNRDLEEAIRSVRAKAVRAEMMTIGGRTKSVVIVQWTGGGEGEAGALERALKAVVENQGLVGPRLGRMSLGHKRARHCYGLPNEGETGFLLRTADM 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2208 265 Coils Coil 171 191 - -
Mibi08g2208 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
Mibi08g2208 265 Gene3D - 46 110 IPR036638 GO:0046983
Mibi08g2208 265 MobiDBLite consensus disorder prediction 108 136 - -
Mibi08g2208 265 MobiDBLite consensus disorder prediction 15 32 - -
Mibi08g2208 265 MobiDBLite consensus disorder prediction 48 66 - -
Mibi08g2208 265 Pfam Helix-loop-helix DNA-binding domain 54 101 IPR011598 GO:0046983
Mibi08g2208 265 MobiDBLite consensus disorder prediction 15 66 - -
Mibi08g2208 265 PANTHER TRANSCRIPTION FACTOR BHLH30 20 246 IPR045847 GO:0003700|GO:0006355
Mibi08g2208 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 109 IPR036638 GO:0046983
Mibi08g2208 265 SMART finulus 58 107 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2208 Mibi-ChrMibi08 39791786 39792663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2208 49 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.323 2.60e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi08g2208 HLH 2e-11 No_clan