Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2207 ATGGGTGGGGTGCCTTCTTACAAGCTATTCACCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACACCACATTCCCACTCCTCCCGCCGGGGGCCGAAGCCGCCGCCGCCTCTGAAACCCTACCTCCTCCGTCTCCGCCGCCGCCGGGAAGTCCACGTGGCATAAGCGAGAGGGGGTCTCCGTTTAAGCCCAGCGTGGTAGCCATCGTCGCAGTATTCACAACCCTGTTTTTCCTCACCTTCCTCCTCCTTCTCTGTGTCAAGCACTGTAAACCAGAGGATGATCCCCTCAGAAATTCACACACAACCATTGGCAACACGGGTAGGAAACACTCCGGCATTGACCGCGCCGTGATCGAATCTTTACCCATTTTCAGATTCGGATCCTTAAGGGGCCAAAAAGAAGGCCTCGAATGTGCCGTTTGCCTCACCCGGTTCGAACCCGTCGAGGTTCTTCGATTACTCCCAAAATGCAAGCACGCCTTCCACGTCGAATGCGTCGACACGTGGCTGGACGCGCATTCCACCTGCCCGCTTTGCCGCTACCGGGTCGACCCGGAAGATATTCTCTTAGTCGGAGAAGCTAAGGTTTGGCCCCAGAACCAACCCGTTATTCAAGAGATCTCCGAAGATCCAAAGCATTGTACGGATATAGAGAGCGGACTGGGACCTGACTCAGAGGATAGGCCCGATTCAAACTCGTTCCTCCGGCGAGTCTCAGGGAGGCACTCATCGGTAGGGGAAAAAGGTGGGATCTTTAAGATTATATTTCAGCATCGAATCAGCGTGGACGACAGCGAGACGACGACGCAGAAGAAAACGGCGCCGTTTAGGATGTCACTGGACAGTGCAATGTCGACGAAGAGGAAAAGGAACGAGAGAGAGATTAGGAAAGATGGGTTGTTGCTAACAGAGAAGGAGAAGGAGAAGCATAAATTAGAGCACAGGATCATAGTGTCTCCGTCTCAAAAGCCGACCAATTCGATTCAACAGAGATGGAGCGATGTACAGCCGTCGGAATTACTGTACCTGACGTCGGAGATGATAATGAGCGAATCGTGTTCGTCGTCGGGACAGAATACGCAGATGATGTCATTGCCACCTCATGGGAGCACCGGAGAGAACAGTAGGGGAGGGATTAATGGGAGAAGCTTGTCGGAAATAACAGGGTTGAGCAGGAAGAGGAGAGAGGAAGGAGGAGATAGAGAGGCGGGAGTGGTATCCAGATGGTTGGCCTGGATCTCTCACTCCAACGCATCTGTACGGTAG 1272 0.5369 MGGVPSYKLFTILLLLLLLLLLHTTFPLLPPGAEAAAASETLPPPSPPPPGSPRGISERGSPFKPSVVAIVAVFTTLFFLTFLLLLCVKHCKPEDDPLRNSHTTIGNTGRKHSGIDRAVIESLPIFRFGSLRGQKEGLECAVCLTRFEPVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGEAKVWPQNQPVIQEISEDPKHCTDIESGLGPDSEDRPDSNSFLRRVSGRHSSVGEKGGIFKIIFQHRISVDDSETTTQKKTAPFRMSLDSAMSTKRKRNEREIRKDGLLLTEKEKEKHKLEHRIIVSPSQKPTNSIQQRWSDVQPSELLYLTSEMIMSESCSSSGQNTQMMSLPPHGSTGENSRGGINGRSLSEITGLSRKRREEGGDREAGVVSRWLAWISHSNASVR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2207 423 Pfam Ring finger domain 139 182 IPR001841 -
Mibi08g2207 423 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Mibi08g2207 423 MobiDBLite consensus disorder prediction 390 404 - -
Mibi08g2207 423 MobiDBLite consensus disorder prediction 369 389 - -
Mibi08g2207 423 FunFam RING-H2 finger protein ATL43 115 189 - -
Mibi08g2207 423 MobiDBLite consensus disorder prediction 37 58 - -
Mibi08g2207 423 SMART ring_2 140 181 IPR001841 -
Mibi08g2207 423 MobiDBLite consensus disorder prediction 369 404 - -
Mibi08g2207 423 MobiDBLite consensus disorder prediction 41 55 - -
Mibi08g2207 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 189 IPR013083 -
Mibi08g2207 423 CDD RING-H2_EL5_like 139 182 - -
Mibi08g2207 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 48 417 - -
Mibi08g2207 423 MobiDBLite consensus disorder prediction 215 247 - -
Mibi08g2207 423 SUPERFAMILY RING/U-box 119 187 - -
Mibi08g2207 423 MobiDBLite consensus disorder prediction 215 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2207 Mibi-ChrMibi08 39782570 39783841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2207 61 421 C3H Transcription Factor Family AT5G05810 44.810 3.78e-88 272