Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2205 ATGTGTATGACCATTATCGTACGGCGATTTATAAAAGCCCGGAAAAGGAAGCAAGTGAAAAAGTTCCATCGTCTTAACTATAAAAGGGAATCATCCCTTTCCTTTCTTGAACATCAACCATCCCCTCTCATCAAAAAAGGTTCTAAGATGGCGAGGGAGAAGATAAAGATAAAGAAAATAGATAACGTGACGGCGAGGCAGGTGACATTCTCAAAGAGAAGAAGAGGTCTATTTAAGAAAGCTTCTGAGCTTTCGGTTCTATGTGATGCTGAAGTTGGTCTCATCGTCTTTTCTGCCACCGGCAAGCTCTTTGAATACTCCAACTCCAGCATGAAGGACATAATTACAAGGTATAACATGTACTCTCGTGACATCAACAAACAAGACAAACCTTCCCTAGAACTGCAGCTAGAGAACAACGATAACTGCAAATTGAGTAAGGAAGTGGCTGAGAAAACGCAGCAGCTAAGGCGCATGAAAGGAGAAGATCTTCAAGGACTTAACCTACAAGATTTGCTCCAACTTGAGAAACTTCTTGAAACTGGACTCGGCCGCGTTATTGAGACAAAGGAAAATCGGATCATGAGTGAGATCTCTCAACTTCAGAAAAAGGGATTGGAATTGGTAGAAGAGAACAAGCAGCTGAAGCACAAGATGGAGATGTTGTGTAGAGGAATAATGCAAGTTCAAGGGGTGGAGTCATCAGATACTGGGATCCAAGAAGAAGGCGTCTCTTCAGATTCTATGACCAATGTATACAGCTGCAATAGTGGCCCTCTTGACGATGATTCCTCTGACACTTCTCTCAAGTTAGGGTAA 819 0.4237 MCMTIIVRRFIKARKRKQVKKFHRLNYKRESSLSFLEHQPSPLIKKGSKMAREKIKIKKIDNVTARQVTFSKRRRGLFKKASELSVLCDAEVGLIVFSATGKLFEYSNSSMKDIITRYNMYSRDINKQDKPSLELQLENNDNCKLSKEVAEKTQQLRRMKGEDLQGLNLQDLLQLEKLLETGLGRVIETKENRIMSEISQLQKKGLELVEENKQLKHKMEMLCRGIMQVQGVESSDTGIQEEGVSSDSMTNVYSCNSGPLDDDSSDTSLKLG 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2205 272 SMART madsneu2 50 109 IPR002100 GO:0003677|GO:0046983
Mibi08g2205 272 FunFam Transcription factor, MADS-box 62 132 - -
Mibi08g2205 272 CDD MADS_MEF2_like 51 124 IPR033896 GO:0000977|GO:0045944
Mibi08g2205 272 PANTHER SERUM RESPONSE FACTOR HOMOLOG 52 213 - -
Mibi08g2205 272 Coils Coil 198 218 - -
Mibi08g2205 272 MobiDBLite consensus disorder prediction 233 272 - -
Mibi08g2205 272 SUPERFAMILY SRF-like 52 123 IPR036879 GO:0003677|GO:0046983
Mibi08g2205 272 ProSitePatterns MADS-box domain signature. 52 106 IPR002100 GO:0003677|GO:0046983
Mibi08g2205 272 ProSiteProfiles MADS-box domain profile. 50 110 IPR002100 GO:0003677|GO:0046983
Mibi08g2205 272 PRINTS MADS domain signature 87 108 IPR002100 GO:0003677|GO:0046983
Mibi08g2205 272 PRINTS MADS domain signature 52 72 IPR002100 GO:0003677|GO:0046983
Mibi08g2205 272 PRINTS MADS domain signature 72 87 IPR002100 GO:0003677|GO:0046983
Mibi08g2205 272 ProSiteProfiles K-box domain profile. 135 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi08g2205 272 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 59 106 IPR002100 GO:0003677|GO:0046983
Mibi08g2205 272 Gene3D - 62 131 IPR036879 GO:0003677|GO:0046983
Mibi08g2205 272 Pfam K-box region 140 219 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2205 Mibi-ChrMibi08 39715593 39721280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2205 50 272 MADS-box Gene Family AT2G22540 57.872 3.27e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi08g2205 K-box 2.6e-14 No_clan