Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2184 ATGGGAGGAGGGAAGATCGTGATTAGGAGGATCGACAATTCGACGAGCAGGCAGGTCACTTTCTCGAAGAGAAGAAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCAATCCTGTGCGACGCGGAGGTTGGAGTTATGATATTCTCCAGCACTGGCAAGCTCTACGATTTCTCCAGCACAAGCATGAAATCAGTAATCGAACGATACGGCAAAACTAAAGAGGAACATCAACTAGGAAGTTCAACCTCTGATGTAAAGTTTTGGCAAAGGGAGGCAGCAATGTTGAGGCAACAACTGCAGAACTTGCAAGAGAGTCACCGGAAAATAATGGGAGAAGAACTTTCAGGTTTGACTGTCAAAGATTTACAGAGTTTAGAGAGCCAATTGGAAATTAGCCTTCGAGGTGTTCGTCTGCAAAAGGATCAACTTTTAATGGATGAAATACAGGAAATAACCCAAAAGGGAAACCTCTTACACCAAGAAAATGTGGAACTGCACAAGAAGGTAAACCTAATTCATCAAGAAAACAAGGACCTAAGAAAGAAGGTCTTTGGAACAAGAGATGAAAATGGAACAAACAGAGACTCTGTTCTCACAGATGGCTTAGGTATAGGAGACAATTTGCATGTGCCAGTGAATCTCCAGCTTAGTCAACCGCATCAGCAAAATCAAGAGTCGCCTTCAGGAGAGTTGGGGTAA 699 0.4363 MGGGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSSTSMKSVIERYGKTKEEHQLGSSTSDVKFWQREAAMLRQQLQNLQESHRKIMGEELSGLTVKDLQSLESQLEISLRGVRLQKDQLLMDEIQEITQKGNLLHQENVELHKKVNLIHQENKDLRKKVFGTRDENGTNRDSVLTDGLGIGDNLHVPVNLQLSQPHQQNQESPSGELG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2184 232 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Mibi08g2184 232 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi08g2184 232 Coils Coil 85 112 - -
Mibi08g2184 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi08g2184 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi08g2184 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi08g2184 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi08g2184 232 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi08g2184 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi08g2184 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 - -
Mibi08g2184 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mibi08g2184 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi08g2184 232 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677|GO:0046983
Mibi08g2184 232 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Mibi08g2184 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2184 Mibi-ChrMibi08 39330961 39341280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2184 1 229 MADS-box Gene Family AT2G22630 57.826 5.47e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi08g2184 K-box 3.5e-26 No_clan