Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2171 ATGTCTCCGCCGCTGCTCGGCATAGGCGAGGAAGAAGGTAAAACCAATGCTACTTTGCTGGTTTCCTCAACTGCCAATGAAAATGCAAGACTCAATGCCACGGAGTTAAAAGAACACAACTATATGGGATTATCTGATTCTTCTTCTGTGGACAGCTCAGTCCTGTCCTTCTCAGATGAGACTAAAAGCAACCTAAACCTAAAGGCCACAGAGCTTAGACTTGGCCTCCCAGGATCTCAGTCTCCTGAACGAGACTCGGAACTCTGCTTGAAAAACTCAACTCAATTGAATGAGAAACCCTTGTTTCCATTGCGCCCGTTAACCGATGATCACCACTCTTCAACAAAGACTGCTGTTTTGGGCAGCAAGAGAGGGTTCTCAGATGCCATGAATGGGTTCTCAGAGGCGAAATTTCTTGTTGATTCAGAGGCCAATAATGTACTGTCCCCCAGACCTTCCCATAACATGGGATTAAAAACTAGCTCTATGCTTGAGAATCTTGGGGCTCAAGCCAAAAAAGCCACAGAAGTAACACCAACAAAGGTGACACTTGAGAGGCCCCATTCTGTCAATGATACTAGAGCAAACCTCGAAGGGTCTGCAAATAACAATAGCAATGCCCCAGCTACCAAGGCCCAGGTTGTGGGTTGGCCTCCTATAAGATCATTTAGGAAGAATTCACTGGCTACTACAAAGAATACTGAAGAAGTAGATGGAAAAGCAGGATCTAGTGCACTGTTCATCAAAGTCAGTATGGATGGTGCTCCATATTTAAGGAAAGTAGATTTGAAGAACTACTCTGCATATCCAGAACTATCATCTGCACTGGAGAAGATGTTCAGTTGTTTTACCATAGGTCAATATGGCTTTCATGGAACTCTAGGCAGGGAGATTTTAAATGAAAGCAAGCTGAAGGATCTGCTTCATGGATCTGAATATGTTCTAACCTATGAGGACAAAGATGGGGATTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCATTGATACATGCAGGAGACTGAGGATCATGAAGAGTTCCGATGCCATTGGTCTTGCTCCGAGGGCAGTGGAAAAAAGCAAGAGCAGGAACTAG 1098 0.4463 MSPPLLGIGEEEGKTNATLLVSSTANENARLNATELKEHNYMGLSDSSSVDSSVLSFSDETKSNLNLKATELRLGLPGSQSPERDSELCLKNSTQLNEKPLFPLRPLTDDHHSSTKTAVLGSKRGFSDAMNGFSEAKFLVDSEANNVLSPRPSHNMGLKTSSMLENLGAQAKKATEVTPTKVTLERPHSVNDTRANLEGSANNNSNAPATKAQVVGWPPIRSFRKNSLATTKNTEEVDGKAGSSALFIKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTIGQYGFHGTLGREILNESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRAVEKSKSRN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2171 365 Pfam AUX/IAA family 70 356 IPR033389 -
Mibi08g2171 365 SUPERFAMILY CAD & PB1 domains 243 346 - -
Mibi08g2171 365 FunFam Auxin-responsive protein 240 357 - -
Mibi08g2171 365 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 352 IPR003311 GO:0005634|GO:0006355
Mibi08g2171 365 Gene3D - 240 359 - -
Mibi08g2171 365 ProSiteProfiles PB1 domain profile. 245 347 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2171 Mibi-ChrMibi08 39208500 39210933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2171 259 347 B3 DNA Binding Superfamily AT1G19220 32.584 3.40e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mibi08g2171 AUX_IAA 6.5e-90 CL0072