Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2162 ATGGATCGCCAATCCATCTTCTTTCTTTTTGGACTCATATTTTCATTGTCTCTTGCATCACAAGCCATCAGTGACGGACAATTACAGTTTTTTAATCAAATGAAGAGGTCTCTCTCGGGGAAATACCCGATCAATTGGGATGTCACAGAAGGAAAAACTGTCTGCAATTTCACCGGAGTTGTCTGCAACAGCCAAGGGGAAGTCACCAGTCTTGACATATCCGGTTGGTCACTTTCTGGAAACTTCCCTTCAGATATATGCTCCAACCTGCCAAAGTTACGTTTTCTGCGTATCGCCCACAATCGTTTGAGAGGAAAATTCCTTGATAGCATCACCAACTGTTCGCACTTAGAAGAGCTTAACATGAATCATGTGTACCATACAGGAACCGTTCCAGATTTCTCACCCATGACATCTCTAAGGATCCTGGATTTGTCATACAACTCGTTCACAGGTCAGTTCCCCATGTCGGTATTTAATCTTACCAATCTTGAGGTGCTTAACTTCAATGAGAACGCTGGTTTCTACTTATGGGAGCTGCCGGAGGATATGTATGGGATGAAAAACCTCAAGTATGTGATATTGACGACGTGCATGGTGCGTGGCCGAATCCCTGCATCCATAGGAAACGTTTCGACTCTGGTTGATCTTGAATTGAGTGGAAACTTTCTCACGGGTCAAATTCCTACAGAGCTTGGGATGCTGAAAAACTTACAGCAACTTGAGCTTTACTATAACCAACTTATTGGCAATATACCCAAGGAGCTAGGAAATCTCATGGAGCTCAGAGACTTGGACATGTCAGTCAATAAACTGTCGGGAAGTATCCCAGAATCCGTGTGTCGTCTCCCCAAGCTTGAAGTGTTGCAGCTATACAATAATAGTCTCACAGGAGAAATCCCAGGTGTGATAGCAAACTCAAAATCCTTGAGAATATTATCTCTTTATGACAATTTTTTGACCGGAGAGGTCCCAAGAAATCTGGGTCAGTTCTCAGGAATGGTGGTTCTAGATTTATCCGAGAACAAACTGTCAGGTCCACTGCCAACAGAGGTTTGCAAGGGAGGTAGACTGATGTACTTCCTTGTTCTGGATAACATGTTTTCTGGAGAGCTACCTGATAGTTATGCAAAGTGCTCGACAATGTTGAGGTTTCGAGTCAGTAATAACCATTTGGTGGGCTCAATCCCCGAGGGGCTCCTTGGTCTCCCGCACGTTTCCATAATTGATGTGAGTAACAATAATTTAAGTGGTCCAATTTCCGAGACTTTTGGAAATCCTAGGAACTTGTCAGAACTATTCATACAGAAGAACAGGATTTCCGGAGTTATACCCCCGACCATCTCTCGAGCTACTAATCTGGTCAAGATTGATTTCAGCAACAACCTTTTGTCCGGTCCAATACCTTTCGAAATCGGCAATCTTAAAAGGCTTAATTTGCTGATGCTGCAAGGGAATAAGCTGAATTCTTCCATCCCAGGCTCACTTTCCTTGTTAAAGTCCCTCAACGTTCTTGATCTCTCCAACAACCTTTTGACCGGTAGCATCCCTGAAAGTTTCTCCGATCTGCTACCTAACTCTATCAACTTTTCAAATAACCTGCTCTCTGGTCCAATTCCTCCATCGTTGATAAAAGGAGGTTTAGTCGAAAGTCTCTCGGGGAATCCTGGTTTGTGTGTGTCACCCGTATATACTAACTCATCCGATCAAAATTTTCCCTTATGTTCAAAGCCTAGCAGCAATAAGAGGCTAAGCACTTTCTGGGTAGCGGGGATTTCAGTGGTTTTGATCTTAACTGGAGCAACTTTGTTCTTGAAACGTAGATGTAGCAAAGAGAGAGCTGCAGTGGAACATGACGAAACACTGTCTTCACCATTCTTCTCTTATGAAATGAAGAGCTTTCACAGGATAACAATTGACCCACGGGAGATCGTGGACGCTATGCTCGAAAAGAATATAGTGGGCCACGGAGGATCTGGGACAGTGTATAAGATCGAGTTAAAAAGCGGCGACTTTGTTGCTGTGAAGAAGTTATGGAGTCGAAAGTCAAAGGATTCGGTTCCAGATCAGGATAGTTCAGCTTTAGACAAGACATTGAAAACTGAGGTGGAGACCCTGGGAAATATAAGACACAAAAACATAGTCAAGCTGTACTGCTACTTCTCGAGTTTGGATTGCAACTTGTTAATTTATGAATACATGCCAAATGGTAATCTCTGGGATGCTCTTCACAAAAGTTCGGTCCATTTGGATTGGCCAACTCGCCATAAGATTGCACTAGGGACGGCGCAGGGTCTGGCATACCTCCACCATGATTTGCTCCCTCCTATAATTCATAGAGACATCAAGTCAACTAACATCCTTCTTGATGTTGATTTCCAACCCAAGGTCGCAGATTTCGGGATTGCCAAGGTATTGCAGGCAAGAGGAGGGAAGGACTCCACATCTACTGTTATTGCAGGCACATACGGTTACTTGGCACCAGAATTTGCTTATTCTCCCAGAGCAACTATCAAGTGTGATGTCTATAGTTTTGGGGTGATTTTGATGGAACTGATAACTGGGAAGAAGCCTGTGGAGGCAGAATTTGGAGAGAACAGAAACATCGTATATTGGGTTTCAAACAAAGTGGACAGCAAGGAAGGGGCTGGTGAGGTATTAGACAAGCGATTGGAAGGGTCCTACAAAGAGGAAATGATTCAGGTGCTCCGAATTGCCATACGTTGCACCTACAAGGCTCAAGCTCTTCGACCGACTATGAAAGAGGTGGTTCAAGTGCTGATTAAGGCAGACCCGTCTAACAAGTTGTCCAATAAGACCAAAGAAACATCAAATGTCACTTTGACAAAGAATTCATCATTGGAGCTGTAG 2871 0.4368 MDRQSIFFLFGLIFSLSLASQAISDGQLQFFNQMKRSLSGKYPINWDVTEGKTVCNFTGVVCNSQGEVTSLDISGWSLSGNFPSDICSNLPKLRFLRIAHNRLRGKFLDSITNCSHLEELNMNHVYHTGTVPDFSPMTSLRILDLSYNSFTGQFPMSVFNLTNLEVLNFNENAGFYLWELPEDMYGMKNLKYVILTTCMVRGRIPASIGNVSTLVDLELSGNFLTGQIPTELGMLKNLQQLELYYNQLIGNIPKELGNLMELRDLDMSVNKLSGSIPESVCRLPKLEVLQLYNNSLTGEIPGVIANSKSLRILSLYDNFLTGEVPRNLGQFSGMVVLDLSENKLSGPLPTEVCKGGRLMYFLVLDNMFSGELPDSYAKCSTMLRFRVSNNHLVGSIPEGLLGLPHVSIIDVSNNNLSGPISETFGNPRNLSELFIQKNRISGVIPPTISRATNLVKIDFSNNLLSGPIPFEIGNLKRLNLLMLQGNKLNSSIPGSLSLLKSLNVLDLSNNLLTGSIPESFSDLLPNSINFSNNLLSGPIPPSLIKGGLVESLSGNPGLCVSPVYTNSSDQNFPLCSKPSSNKRLSTFWVAGISVVLILTGATLFLKRRCSKERAAVEHDETLSSPFFSYEMKSFHRITIDPREIVDAMLEKNIVGHGGSGTVYKIELKSGDFVAVKKLWSRKSKDSVPDQDSSALDKTLKTEVETLGNIRHKNIVKLYCYFSSLDCNLLIYEYMPNGNLWDALHKSSVHLDWPTRHKIALGTAQGLAYLHHDLLPPIIHRDIKSTNILLDVDFQPKVADFGIAKVLQARGGKDSTSTVIAGTYGYLAPEFAYSPRATIKCDVYSFGVILMELITGKKPVEAEFGENRNIVYWVSNKVDSKEGAGEVLDKRLEGSYKEEMIQVLRIAIRCTYKAQALRPTMKEVVQVLIKADPSNKLSNKTKETSNVTLTKNSSLEL 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2162 956 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 25 177 - -
Mibi08g2162 956 Pfam Protein kinase domain 651 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g2162 956 Gene3D Ribonuclease Inhibitor 305 570 IPR032675 -
Mibi08g2162 956 SUPERFAMILY L domain-like 276 564 - -
Mibi08g2162 956 Gene3D Transferase(Phosphotransferase) domain 1 734 953 - -
Mibi08g2162 956 PRINTS Leucine-rich repeat signature 334 347 - -
Mibi08g2162 956 PRINTS Leucine-rich repeat signature 499 512 - -
Mibi08g2162 956 ProSiteProfiles Protein kinase domain profile. 648 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g2162 956 SUPERFAMILY Protein kinase-like (PK-like) 636 927 IPR011009 -
Mibi08g2162 956 FunFam receptor protein-tyrosine kinase CEPR1 631 733 - -
Mibi08g2162 956 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 734 945 - -
Mibi08g2162 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Mibi08g2162 956 SMART serkin_6 648 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g2162 956 FunFam Leucine-rich repeat receptor-like protein kinase 178 279 - -
Mibi08g2162 956 FunFam Receptor protein-tyrosine kinase CEPR1 283 569 - -
Mibi08g2162 956 SUPERFAMILY RNI-like 67 367 - -
Mibi08g2162 956 Gene3D Phosphorylase Kinase; domain 1 632 733 - -
Mibi08g2162 956 ProSitePatterns Protein kinases ATP-binding region signature. 654 677 IPR017441 GO:0005524
Mibi08g2162 956 SMART LRR_typ_2 235 259 IPR003591 -
Mibi08g2162 956 SMART LRR_typ_2 475 498 IPR003591 -
Mibi08g2162 956 SMART LRR_typ_2 331 355 IPR003591 -
Mibi08g2162 956 SMART LRR_typ_2 499 522 IPR003591 -
Mibi08g2162 956 SMART LRR_typ_2 283 306 IPR003591 -
Mibi08g2162 956 SMART LRR_typ_2 403 426 IPR003591 -
Mibi08g2162 956 SMART LRR_typ_2 90 115 IPR003591 -
Mibi08g2162 956 SMART LRR_typ_2 161 187 IPR003591 -
Mibi08g2162 956 MobiDBLite consensus disorder prediction 936 956 - -
Mibi08g2162 956 Gene3D Ribonuclease Inhibitor 25 304 IPR032675 -
Mibi08g2162 956 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 246 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2162 Mibi-ChrMibi08 39116197 39119385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2162 24 946 Receptor kinase-like Gene Family AT5G49660 64.547 0.0 1221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mibi08g2162 Pkinase 1.8e-45 CL0016