Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2124 ATGGAAGCAGCCGAGTATTTCCAATTCACCTCCTCCTCCTCCTCGGAACCAAAAAGCGAGCATTTCATGGTGGAGGACCTCCTCGACCTCTCCCACCACGACGATGACAACGACGCCATCATCGCCCACGACTCTCTTCCCGCCGATGATTCATCTTCCTTTCTCATTAACTCCCTCCATTCCTCCTCCAACAATAATAATTTCAGCCCCCACTTTCCCCTCCGAAATTTACCCGACCCCTATTTCTCCCCCGACCTCTGCCTCCCGAGCGATGATATGGCAGAGCTGGAATGGCTGTCCAACATTGGGGAGGAATCATTCTCGAGCGAGGACCTGCAGAAACTGGAGCTCATATCAGGCATAAAGGTAAAAAACGAGGAAGCATCAGAAAGCCGTGACGAGTTTCAGCAACACGAAGAAGCCAACCGAAACGACGCCTTATTCAAACGGCAAGTGTCGGTTCCGGCGAAGGCTCGCAGCAAGAGATCCCGTGGGCCCCCATGCAAGTGGACCTCACGCCTCGTCGCCCTCTCCCCCACTACGTCATCCTCCTCCGACGCTGACGTCATCCTCCCCGGGAAGAAATCTGGTGGCCGGAGGAAGGAGAACGGCGGCGATGAGGGTCCCGGCGGGGGGCGGAGATGCCTGCATTGCGCGACGGATAAGACGCCGCAGTGGAGGACGGGGCCGATGGGGCCCAAGACATTATGCAATGCGTGTGGGGTGAGATACAAGTCAGGGAGGTTGGTGCCGGAGTATAGGCCGGCGGCCAGCCCGACGTTTGTGCTGACTAAGCACTCCAACTCGCACAGGAAGGTGATGGAGCTGAGAAGGCAGAAGGAGATGATAAGGGCTCACCAGGAGCAGCAGCAGCACATGTTTTTGCACCATCATCATCAAAACTTGATGTTTGATGTCTCATCCAACGGTGACGATTACTTGATTCATCAACATGTGGGCCCTGATATCAGGCACCTCATCTAG 984 0.5559 MEAAEYFQFTSSSSSEPKSEHFMVEDLLDLSHHDDDNDAIIAHDSLPADDSSSFLINSLHSSSNNNNFSPHFPLRNLPDPYFSPDLCLPSDDMAELEWLSNIGEESFSSEDLQKLELISGIKVKNEEASESRDEFQQHEEANRNDALFKRQVSVPAKARSKRSRGPPCKWTSRLVALSPTTSSSSDADVILPGKKSGGRRKENGGDEGPGGGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMIRAHQEQQQHMFLHHHHQNLMFDVSSNGDDYLIHQHVGPDIRHLI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2124 327 MobiDBLite consensus disorder prediction 126 212 - -
Mibi08g2124 327 ProSiteProfiles GATA-type zinc finger domain profile. 209 245 IPR000679 GO:0006355|GO:0043565
Mibi08g2124 327 ProSitePatterns GATA-type zinc finger domain. 215 240 IPR000679 GO:0006355|GO:0043565
Mibi08g2124 327 SMART GATA_3 209 259 IPR000679 GO:0006355|GO:0043565
Mibi08g2124 327 PIRSF Txn_fac_GATA_plant 1 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mibi08g2124 327 Gene3D - 209 291 IPR013088 GO:0006355|GO:0008270
Mibi08g2124 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 273 - -
Mibi08g2124 327 MobiDBLite consensus disorder prediction 126 146 - -
Mibi08g2124 327 MobiDBLite consensus disorder prediction 174 189 - -
Mibi08g2124 327 MobiDBLite consensus disorder prediction 193 208 - -
Mibi08g2124 327 Coils Coil 121 141 - -
Mibi08g2124 327 PANTHER GATA TRANSCRIPTION FACTOR 11 290 - -
Mibi08g2124 327 FunFam GATA transcription factor 205 292 - -
Mibi08g2124 327 CDD ZnF_GATA 214 261 IPR000679 GO:0006355|GO:0043565
Mibi08g2124 327 Pfam GATA zinc finger 215 248 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2124 Mibi-ChrMibi08 38721499 38722679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2124 22 327 C2C2-Gata Transcription Factor Family AT5G25830 51.488 3.08e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi08g2124 GATA 2.9e-15 CL0167