LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi08g2072	ATGCCTCCAACTTGCGAGTTTGCACGGATGGGGCGGGAGTTGGAAGTAGCGGAGGAGCTGATGGCGATGGTGTCGGAGATTACCAACGGATCTGTCATCGATGACGACGTCAAATCGCCGCCAGACTTCATGTCTCACACTGTCAACAAAGGTTTCGATGCATATGATGACTACTTCGGCGGCGTCACCTTCTATGACAACATTCACTCCGCTCTGGAATCGATGAATAATGAATTTCCAGCTTGGGGGGAACTTGAAGTAGAAGATAACAACACCAATATTGCGTGGGTCCCCAACGTGTCTCCCAATCGTTCTCCTATTTCTTGCATCACTGATCAGTCATCCATTTCTGTGGGAAGCCCCATGTCAGCGAATAAATTAGAACAAGGAGATAATCAAGCAAGAGGAACTTCAAGTGGTGAGCAGTCTGATGAGGACGATGAAACAGGTCCTTTTGATGAACAGGTCATTAATCCCTCTGATAAGCGCGACAGAAGGAAGAAATCTAATCGGGAGTCTGCAAGGAGATCCAGAAGAAGAAAACAAGCGCACTTAGCTGAACTTGAGACTCAGGTTGAGCAATTGAGGGTGGAAAATGCAACTCTATCCAAGCAGCTTGTAGATGCTGATCAGCATTTTCGTGATGCTGATACCAATAACCGAGTGCTCAAATCAGATGTGGAAGCCTTGAGAGCTAAGGTGAAGCTGGCTGAAGACATGGTGGCTCGTGGCTCTTTAACCACATTAAACAACCAGGTTCTTCATCAGATTCCGAGCCAGCACCACCACCTGAACCCGCATAATCTGCGCGGAATGGCACACGTGTCGCCGACCATTAACGTCAATGGAAACAACACCTCATCGTATGCTTCCGCCGTGACAGCAGTTGGAGCTCATCAGAACTCATCTCTTGCGGTACTTGACAACTTAGATGTCACCAGTAACTGTTTCAACCCCTGGTCTAGTCTTAACTGA	975	0.4779	MPPTCEFARMGRELEVAEELMAMVSEITNGSVIDDDVKSPPDFMSHTVNKGFDAYDDYFGGVTFYDNIHSALESMNNEFPAWGELEVEDNNTNIAWVPNVSPNRSPISCITDQSSISVGSPMSANKLEQGDNQARGTSSGEQSDEDDETGPFDEQVINPSDKRDRRKKSNRESARRSRRRKQAHLAELETQVEQLRVENATLSKQLVDADQHFRDADTNNRVLKSDVEALRAKVKLAEDMVARGSLTTLNNQVLHQIPSQHHHLNPHNLRGMAHVSPTINVNGNNTSSYASAVTAVGAHQNSSLAVLDNLDVTSNCFNPWSSLN	324

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi08g2072	324	SMART	brlzneu	158	222	IPR004827	GO:0003700\|GO:0006355
	Mibi08g2072	324	FunFam	BZIP transcription factor	160	211	-	-
	Mibi08g2072	324	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	160	206	IPR004827	GO:0003700\|GO:0006355
	Mibi08g2072	324	MobiDBLite	consensus disorder prediction	111	139	-	-
	Mibi08g2072	324	Gene3D	-	161	214	-	-
	Mibi08g2072	324	CDD	bZIP_plant_GBF1	176	214	IPR045314	GO:0003700\|GO:0006355
	Mibi08g2072	324	Coils	Coil	171	212	-	-
	Mibi08g2072	324	SUPERFAMILY	Leucine zipper domain	162	206	IPR046347	GO:0003700\|GO:0006355
	Mibi08g2072	324	MobiDBLite	consensus disorder prediction	111	184	-	-
	Mibi08g2072	324	PANTHER	BASIC LEUCINE ZIPPER 63	113	303	-	-
	Mibi08g2072	324	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	165	180	IPR004827	GO:0003700\|GO:0006355
	Mibi08g2072	324	Pfam	bZIP transcription factor	160	206	IPR004827	GO:0003700\|GO:0006355
	Mibi08g2072	324	Coils	Coil	220	240	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi08g2072	Mibi-ChrMibi08	37987994	37992296	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi08g2072	116	303	bZIP Transcription Factor Family	AT5G24800	50.505	2.38e-42	146

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Mibi08g2072		bZIP_1	4.6e-13	CL0018