Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2053 ATGCAACAAAGGCTTAAGCTTCAGCAGCAACAAGAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAACAGCAGATGTATCACCCAGCGATGCTAGCCGCTACTATGTCCCAGATTGAGCCTATTCCGGGTGGAAATTTGCCTCCAGGCTTTGACCCTACTACATGCCGCAGCGTTTATGTAGGAAATATTCATGTAAATGTTACTGAGAAACTTCTTGCTGAAGTTTTTCAAAGTGCCGGTCCTCTCGCTGGGTGCAAGCTTATAAGGAAAGAAAAGTCCTCGTATGGTTTTGTGGACTACCATGATAGAGCATCTGCAGCCTTTGCAATAATGAATTTGCATGGACGCCAACTATATAATCAGCCGCTTAAGGTGAATTGGGCATTTGCCAATGCCCATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAAGGTCATGTGGGATCTCAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCAACAGGATGCTCAAAATGCTATCAATGATATGACTGGTAAGTGGCTGGGAAATAGGCAAATAAGATGCAATTGGGGAACCAAGGGTGCTGGTATGAGTACCAATGAGGAGAAGAATAATGACACCCAAAATGCTGTTGTGCTTACAAATGGGTCTTCAGATGGAGGTCAGGAATATAATAGTGAGGATGCTCCTGAAAACAGTCCCGCCTATACCACCGTTTATGTTGGCAACCTTCCCCATGATGTAACGCAAAATGAGCTCCACTATCAGTTCCATGCATTAGGGGCTGGAGTGATTGAGGAGGTCCGAATTCAAAGGGATAAGGGTTTTGGATTTGTGAGATACAACACTCACGAAGAAGCAGAGTTGGCCATTCAGATGGCTAATGGAAGAATACTTCGTGGAAAAGCAATGAAGTGTTCATGGGGTAACAAGCCAACACCTCCTGGAACAGCTTCAAACCCACTACCTCCTCCCACACAACCTTATCAAATGCTTCCCACAACAGGAATGAACCAAGGCTATTCTCCTACTGAGGTATTGGCTTATCAACGTCAAGTGGCCTTAAGTCAGGCTGCTGTTTCTGGCCTTTCAGGTCAAGCTCTTGTCCATATGACTGGTCAACATGGCCTTGGCTTAAGCTCTGGGGCCTCCCAAGCCATGTATGATGCTTATTCTGGTAATTCTTCAAGGCAGCACCTCATGTACTACCGTTAA 1293 0.4509 MQQRLKLQQQQEALMQQALLQQQQMYHPAMLAATMSQIEPIPGGNLPPGFDPTTCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAAFAIMNLHGRQLYNQPLKVNWAFANAHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQNAINDMTGKWLGNRQIRCNWGTKGAGMSTNEEKNNDTQNAVVLTNGSSDGGQEYNSEDAPENSPAYTTVYVGNLPHDVTQNELHYQFHALGAGVIEEVRIQRDKGFGFVRYNTHEEAELAIQMANGRILRGKAMKCSWGNKPTPPGTASNPLPPPTQPYQMLPTTGMNQGYSPTEVLAYQRQVALSQAAVSGLSGQALVHMTGQHGLGLSSGASQAMYDAYSGNSSRQHLMYYR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2053 430 SMART rrm2_1 142 215 IPR003954 GO:0003676
Mibi08g2053 430 SMART rrm1_1 57 126 IPR000504 GO:0003723
Mibi08g2053 430 SMART rrm1_1 264 333 IPR000504 GO:0003723
Mibi08g2053 430 SMART rrm1_1 142 215 IPR000504 GO:0003723
Mibi08g2053 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Mibi08g2053 430 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 45 340 - -
Mibi08g2053 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 337 IPR000504 GO:0003723
Mibi08g2053 430 FunFam Oligouridylate-binding protein 1C 240 341 - -
Mibi08g2053 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 213 IPR000504 GO:0003723
Mibi08g2053 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 330 IPR000504 GO:0003723
Mibi08g2053 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
Mibi08g2053 430 Gene3D - 240 341 IPR012677 -
Mibi08g2053 430 SUPERFAMILY RNA-binding domain, RBD 251 346 IPR035979 GO:0003676
Mibi08g2053 430 SUPERFAMILY RNA-binding domain, RBD 135 226 IPR035979 GO:0003676
Mibi08g2053 430 CDD RRM3_TIA1_like 263 337 - -
Mibi08g2053 430 Gene3D - 1 139 IPR012677 -
Mibi08g2053 430 CDD RRM2_PUB1 142 216 - -
Mibi08g2053 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
Mibi08g2053 430 FunFam Nucleolysin TIAR-like protein 1 139 - -
Mibi08g2053 430 SUPERFAMILY RNA-binding domain, RBD 41 133 IPR035979 GO:0003676
Mibi08g2053 430 Gene3D - 140 219 IPR012677 -
Mibi08g2053 430 FunFam Nucleolysin TIAR-like protein 140 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2053 Mibi-ChrMibi08 37843346 37848350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2053 57 322 Eukaryotic Initiation Factors Gene Family AT1G22760 27.007 2.30e-26 110