Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2040 ATGACCACTCTACTGGATGATTTTAAGAGTCACAGCTCATTCCTTTCTTTCTCTGAAAGCCTGCACGATTCTCAACTCTCTCTGCAGACAACAATCACACAAAGGTTTAAATCGAATAGGAAACAGATGAGTGATTGTTCTGGTAAACGAGCCATAGATGGAATGGTAGTGCCTAAAAAGGGGATGGCTCACGTATTTAGAGATACTGCTAATGCTAGGGACCGTAATGGTCAATTTTGCAGCCGACCTGGTTGCAGCAGTAGAGTGAATTCTCCCAAGGGTGCTCAATATGGTTCATCTGAGAAAGGTAAATCTTCGAGGCCTCCAATCCGAACTTCAAGTCGTAAGGAAGCAATTGGAAGTTCCTCTAGGACTTTGCCAGGATCTTATAACCCAGGAAAATCCCCTATAGAGCCCCGGAAAACATTATCTTGTCAGCCAGAGACTGTTCCATGTGAAACGAGTAGTTTACAGGATGAATCAGAAAATTCTGAGCTCATCCCACCACCTGGAAAAATTCGAAGAGGGCCTCAAGCTGAATCAGGAAGTTCACAGTCTTCTAATATCATATCAATGGAAGTAGGAAGTTCTAGTGCAGCATCAAACACAACATATAGGAGAAACCTTCGTCTAAAGCCTGGATCGAATAGTCAAGAATTTAATAAAAGCTCTGGCTCAGTGACACACACTGGAGTTAACAGGTATGGGTTGAGGAACCTCAGATGCAATTCTATATCTGATGTCATCCCTTCAGGCTGTTCATCAGATTCAATCCAGAATAGAAGGAAAGATGTGATGAAAAAGAGAAACTGTGAAGGAGAAAGTAGCTCTAATGCTAGAGGTAAAAAGATAAGTGGATCTTCATTGGAGGGACAAAATTCTGGATCCAGAAATGGTATATCCATATCAGATTCAAGAAGATCCAGAAACTTTCCTTCTCACAAGGATAACAACAACATTGGAACAGTAAGAACTAGAAGATCTTTCAGTGGTCATGGCAGGGGAAGGCTTCCCAGCCAAGCTAACGAAAACCCTGCACCGCCCAATGAGTCCCCTATCACAATATCATCTTTGACTCATTCCAGTGACCTTAGTGCTCATGATTTATTACATCATTCCTCATTGGAGACTTCCCTCAGAAGTCCAAGATCTTACAGTAGACCAGGTAGTAGCAGTGAGCGGTTATTTGGTGGTTTGCCTCCATCTCCTTCAGAATATGGGATTACTCGCTCTCTCATGAACCGGGACAGCTTCCAACGCTACAACATGGGCGGTATTGCCGAGGTATTATTGGCACTCGAGAGAATTGAACAAGATGAAGATCTCACACATGAGCAAATTCTGTTGCTGGAAACCAACTTGCTTCTTAGTGGACTAAACTTCTATGATCAACATAGAGACATGCGATTGGATATTGATAGCATGTCATACGAGGAGCTATTGGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCACTTTCAGAATGCCTGAAGAGAAGTTTCTATCAACCTGCCACTTCAGATGATGCAGCCGAGAGCTGCAACGAGGATAAGGATGACATAAAATGCAGCATCTGCCAGGAAGAATATGTGGAAGCAGAGGAAGTGGGGAGCTTGAAATGCGAGCATAGATATCATGTAATATGCATACAGCACTGGCTGCGCCTCAAGAACTGGTGTCCTATTTGCAAAGCTTCTGCGGCACCATCACACTCCTCTTCAACTTCAACCCCTTGA 1755 0.4365 MTTLLDDFKSHSSFLSFSESLHDSQLSLQTTITQRFKSNRKQMSDCSGKRAIDGMVVPKKGMAHVFRDTANARDRNGQFCSRPGCSSRVNSPKGAQYGSSEKGKSSRPPIRTSSRKEAIGSSSRTLPGSYNPGKSPIEPRKTLSCQPETVPCETSSLQDESENSELIPPPGKIRRGPQAESGSSQSSNIISMEVGSSSAASNTTYRRNLRLKPGSNSQEFNKSSGSVTHTGVNRYGLRNLRCNSISDVIPSGCSSDSIQNRRKDVMKKRNCEGESSSNARGKKISGSSLEGQNSGSRNGISISDSRRSRNFPSHKDNNNIGTVRTRRSFSGHGRGRLPSQANENPAPPNESPITISSLTHSSDLSAHDLLHHSSLETSLRSPRSYSRPGSSSERLFGGLPPSPSEYGITRSLMNRDSFQRYNMGGIAEVLLALERIEQDEDLTHEQILLLETNLLLSGLNFYDQHRDMRLDIDSMSYEELLALEERMGSVSTALTEEALSECLKRSFYQPATSDDAAESCNEDKDDIKCSICQEEYVEAEEVGSLKCEHRYHVICIQHWLRLKNWCPICKASAAPSHSSSTSTP 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2040 584 MobiDBLite consensus disorder prediction 373 401 - -
Mibi08g2040 584 MobiDBLite consensus disorder prediction 342 356 - -
Mibi08g2040 584 MobiDBLite consensus disorder prediction 115 130 - -
Mibi08g2040 584 MobiDBLite consensus disorder prediction 260 276 - -
Mibi08g2040 584 MobiDBLite consensus disorder prediction 250 356 - -
Mibi08g2040 584 SMART ring_2 529 569 IPR001841 -
Mibi08g2040 584 MobiDBLite consensus disorder prediction 147 163 - -
Mibi08g2040 584 MobiDBLite consensus disorder prediction 277 307 - -
Mibi08g2040 584 SUPERFAMILY RING/U-box 523 574 - -
Mibi08g2040 584 FunFam E3 ubiquitin-protein ligase arkadia 491 575 - -
Mibi08g2040 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 575 IPR013083 -
Mibi08g2040 584 MobiDBLite consensus disorder prediction 375 391 - -
Mibi08g2040 584 MobiDBLite consensus disorder prediction 74 188 - -
Mibi08g2040 584 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 156 574 IPR045191 GO:0061630
Mibi08g2040 584 MobiDBLite consensus disorder prediction 210 231 - -
Mibi08g2040 584 ProSiteProfiles Zinc finger RING-type profile. 529 570 IPR001841 -
Mibi08g2040 584 MobiDBLite consensus disorder prediction 74 107 - -
Mibi08g2040 584 Pfam Ring finger domain 528 570 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2040 Mibi-ChrMibi08 37661334 37666210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2040 426 573 C3H Transcription Factor Family AT2G15530 40.541 1.74e-33 134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2040 08 37661334 37666210 Mibi08g2040 08 37661334 37666210 ECH