Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2024 ATGAGTAAGCCAACTACAAGAAGTAAAAATAAAAGACAGAGACAAGTGGATGATGGCACTGGCACCTCTGAAATATGGAGGAAAATTCATGAAGCAGGTGTGGTGACTGATGATGATATAAGTCAACTTTATATGATTTGGAAGCCAGTCTGTTCAAGCTGCCGTGTTAATACTAAAGACAACCCTAATTGCTTTTGTGCTTTGATTCCACCTCCCAATGGAACCAGGAAATCTGGCCTATGGCAGAAGGTGTCAGGTATTGTAGACAATCTTGGTCCTGACCCAACTAAGGACCTTCGCGAATCTGCTAATTCACCTGCTGGTCTAACAAATCTTGGGGCCACATGCTATGCTAACAGCATACTGCAGTGCTTGTACATGAACAAATGTTTCCGGGAAGGCATATTTTCTGTAGAACCAGATCTTTTGCTACAGCAGCCAGTGTTAAATCAACTGGTGCGGCTTTTCGTCCAGTTGCACATTAGTAAAAGGGCTTTTGTGGATTCATTCCCTTTTGTCAAAACACTGGAGTTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTTTTGACATTGCTTTTGTCTTTGCTGGAGCGTTGTCTAAGCCATTCTAAAGTTCCTAAAGCAAGAACGGTAGTTCAAGATCTTTTTCGGGGAAGTGTGTCTCATGTGACAACCTGCTCACAATGTGGAAGAGACTCTGAAGCATCTTCGAAAATGGAAGACTTCTATGAGCTGGAGTTGAATGTCAAGGGACTTAAAAGTTTAGATGAAAGCCTTAATGATTATCTCGCTGTGGAGGAGCTTCGTGGGGATAATCAATATTCCTGCGAATCATGTAAAACAAGAGTGGATGCTACTCGTAGCATCAAGCTGCGATCATTACCTGATGTACTTAATTTTCATCTTAAACGTTGTGTCTTCCTTCCAGAGACTACAACAAGGAAGAAAATTACTTCTGCATTTTCATTTCCAGCTAAGCTTGACATGCAGCCTAGATTGTCTGAGCCATCTCAGTCTGAATTGATATATGACTTATCAGCTGTTCTGATTCACAAGGGAACTACTGTTAATAGTGGCCACTATGTTGCTCACGTCAAGGATGAGAATACTGGGCTGTGGTGGGAATTTGACGATGAGCACGTCACTGAATTAGGCCGTCATCCATTTGGTGAAAGATCTTCAAATTCTATGGCAAAATCTGTTAGGACCGATACTGTTCATTCTGATGCATCTGAAGTGAGGTTAGCTGACAGTAATGGAAATGGTCCAGATGCCTCTCACACACAATCCTCTCCTGTGGAGACATTTTCATCTAATGATGCATACATGCTGATGTACAATCTTAAGCACACGGAAAATGTAGTCAAAATGGGGGATGTGCTCAGCAATGGTGATGCTGTCCCTGCACGAGATAGATTTCCTCTTTTATCTCATTTCTTTGATGAGATTCAAAACCTTAATGCTTCATACGTTGATGAGTGTGCACAATACAATCATAGGAAAGAGTTAGAACTGAGTCGAATCACTGAAAGGAGACTAGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCACTCGAGCATCCATTTTATTGGATTTCTAGTGACTGGCTTCGCCAGTGGGCTGACAACGTTGATCCAAGCACTCTTGACAATACATCCATTCAATGCTCACATGGGAAGGTTCCTGTATCCAAGGCTACTTCAATAAAGCGATTGTCTGATAAAGCATGGAATAAATTGTTTTCAAAGTATGGTGGGGGGCCAACACTGTCCCATAGTGATTGTTGTTTGGATTGTCTTATTGACGGAGCTCACTCTGTGGTGTCAGCTGACACCTATCGTGACCGAAGGGAATCAATGAAGCAACTTGCACGGGACATTCTTGACAGAAACTGTGCAGACGGAAAGTATTTCGTATCTAGGCCATGGTTGCAACAGTGGTGGAAAAGAAAAGTACTTGATGCTCCATCTGAAGCTGATGCTGGACCGACCGCGTCAATTAGTTGCCCACACGGGCAACTCTTACCTGAGCAAGCTGCTGGTGCCAAGAGGGTGCTTGTTCCTGAGAACTTTTGGCACTTCTTATATGGAGATGCTCTTTCTGTAAAACCTGATGATCCATTGGGTTGCCCAACATTTCCTTCAGACTCAGTGCCTTGCTCCCAATGCAGTGATGAATTATCTGAAGTAGCATGCTTGGAGGACTCTTTAAAATTAGTGAAGCAAGTGCAACGTCAGAATCATGAGAAACTATTACTGGCTAAAAGTATGCCTCTCTCAACGCATTGCAAATATTTCTTAGTGCCTTCTTCATGGATTTCAAAATGGAGAAGTTACATGAGTCCGTCTGTTAAGAATTCAGACAAACCTGAAACCTTAGACAGGGTAATCAATTCCCTTATGTGTGAAAAGCACTCCCTCCTTGTGGAAAAGCCCCTTGAACTGGTTTTCAGACGTGGTGCTATATTCCAGCGAGAATCTTCTGCAGGAGGTTTAACCATGATATCTGAGAATGATTGGAAATGCTTTTGTGAGGAGTGGGGTGGTACTGAGACAAAAGGTATATATGCAACAATTGAGTATATCAGTGATTCAGAGAATATTTTGACTGGATTCAGCTCTGAGACACCAATATGTGGGGATCAGTTAAACGATAAAGTGAATAATGATAGCACTAGACAGCTGGTGATTAAGACTTGTCCGGAGATCTGTGAAAGTTGCATTGGAGAAAGAGAAAGCTGTGAGTTAATGCAGAGACTTAACTATAGTAATGAGGACATATCCGTGATTCTTGTAAGGGGAAAGGAGGTTCCTAAATCAATCATAGAGGCTTCAAAGGGCTCTGTTGAAACAGATCGGCGTGTTTCCAAGCGCTCCCGTAAATCCAAAAATGGGACTTCAATAAGTCTTAAAGTTTCTGCTTCAACATCACTGTACCAGCTGAAAATGATGATATGGGAGGCCTTTGGGGTTGTGAAGGAAAACCAGATATTACAGAAAGGTGACAGGACAATTGATAATGAGGATGAATGTGTTACGCTTGCAGATGTAAACATATTTGCTGGAGATCAGATCATAGTGAGGGACTCTGAGATCCATGAAAACAGAGATATTGCTGATGAGATTTGTGATGATAAAATGGAAATGCAGCAGAGTGAAGGAGGGTTTCACGGAACGCTCCTGACAGCAGACATTTCATCTCAGGTTTAG 3219 0.4222 MSKPTTRSKNKRQRQVDDGTGTSEIWRKIHEAGVVTDDDISQLYMIWKPVCSSCRVNTKDNPNCFCALIPPPNGTRKSGLWQKVSGIVDNLGPDPTKDLRESANSPAGLTNLGATCYANSILQCLYMNKCFREGIFSVEPDLLLQQPVLNQLVRLFVQLHISKRAFVDSFPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVPKARTVVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLNDYLAVEELRGDNQYSCESCKTRVDATRSIKLRSLPDVLNFHLKRCVFLPETTTRKKITSAFSFPAKLDMQPRLSEPSQSELIYDLSAVLIHKGTTVNSGHYVAHVKDENTGLWWEFDDEHVTELGRHPFGERSSNSMAKSVRTDTVHSDASEVRLADSNGNGPDASHTQSSPVETFSSNDAYMLMYNLKHTENVVKMGDVLSNGDAVPARDRFPLLSHFFDEIQNLNASYVDECAQYNHRKELELSRITERRLEVRSVLAEAPVQPLEHPFYWISSDWLRQWADNVDPSTLDNTSIQCSHGKVPVSKATSIKRLSDKAWNKLFSKYGGGPTLSHSDCCLDCLIDGAHSVVSADTYRDRRESMKQLARDILDRNCADGKYFVSRPWLQQWWKRKVLDAPSEADAGPTASISCPHGQLLPEQAAGAKRVLVPENFWHFLYGDALSVKPDDPLGCPTFPSDSVPCSQCSDELSEVACLEDSLKLVKQVQRQNHEKLLLAKSMPLSTHCKYFLVPSSWISKWRSYMSPSVKNSDKPETLDRVINSLMCEKHSLLVEKPLELVFRRGAIFQRESSAGGLTMISENDWKCFCEEWGGTETKGIYATIEYISDSENILTGFSSETPICGDQLNDKVNNDSTRQLVIKTCPEICESCIGERESCELMQRLNYSNEDISVILVRGKEVPKSIIEASKGSVETDRRVSKRSRKSKNGTSISLKVSASTSLYQLKMMIWEAFGVVKENQILQKGDRTIDNEDECVTLADVNIFAGDQIIVRDSEIHENRDIADEICDDKMEMQQSEGGFHGTLLTADISSQV 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2024 1072 FunFam Ubiquitin carboxyl-terminal hydrolase 26 498 596 - -
Mibi08g2024 1072 SUPERFAMILY Cysteine proteinases 105 447 IPR038765 -
Mibi08g2024 1072 SMART dusp 525 601 IPR006615 GO:0004843
Mibi08g2024 1072 Gene3D Cysteine proteinases 93 450 - -
Mibi08g2024 1072 ProSiteProfiles DUSP domain profile. 614 721 IPR006615 GO:0004843
Mibi08g2024 1072 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Mibi08g2024 1072 MobiDBLite consensus disorder prediction 1 22 - -
Mibi08g2024 1072 Gene3D - 738 857 IPR035927 -
Mibi08g2024 1072 SUPERFAMILY Ubiquitin-like 965 1031 IPR029071 -
Mibi08g2024 1072 MobiDBLite consensus disorder prediction 415 434 - -
Mibi08g2024 1072 FunFam ubiquitin carboxyl-terminal hydrolase 48 94 450 - -
Mibi08g2024 1072 MobiDBLite consensus disorder prediction 387 410 - -
Mibi08g2024 1072 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Mibi08g2024 1072 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Mibi08g2024 1072 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Mibi08g2024 1072 Gene3D - 499 597 IPR035927 -
Mibi08g2024 1072 SUPERFAMILY DUSP-like 510 598 IPR035927 -
Mibi08g2024 1072 CDD Ubl_USP48 963 1064 IPR044743 GO:0004197|GO:0004843|GO:0016579
Mibi08g2024 1072 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Mibi08g2024 1072 ProSiteProfiles DUSP domain profile. 507 599 IPR006615 GO:0004843
Mibi08g2024 1072 ProSiteProfiles DUSP domain profile. 742 862 IPR006615 GO:0004843
Mibi08g2024 1072 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 76 450 - -
Mibi08g2024 1072 Gene3D - 962 1033 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2024 Mibi-ChrMibi08 37516320 37528425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2024 105 382 Miscellaneous Gene Families AT4G31670 29.836 2.56e-27 117