Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2005 ATGTATGTCAAATCGGCGCAGTCATCGTTTCGGGATCGGACACAGGAGTTTCAGAGTATAGCAGAGAGGCTAAAGAAGTCGGTGTCGTCCGGATCAGGTATAAACGGGCCAAGTAGCAGTTCAAGATCGGAGGATCAGCGATCTGCGATCGCAATTCAGTCGGAATTCAATAGGAGGGCTTCCAAGATTGGTTATGGGATACATCAGACTTCACAGAAGCTTGCTAAGCTGGCCAAGTTGGCAAAAAGGACCTCCGTTTTTGATGACCCCACTATGGAAATCCAAGAGCTCACAGCAGTTATTAAGCAAGATATCACTGCACTGAACTCTGCCGTTGTGGACCTGCAGCTGGTCAGCAACGCTAGAAATGACAGTGGAAATATCTCGAGTGACACTACTAGTCATTCAACCACTGTGGTAGACGACCTTAAAACTCGATTGATGAGCACCACAAAAGAGTTTAAAGAAGTCCTCACCATGCGAACAGAGAACTTGAAGGTGCATGAGAATAGAAGACAGTTGTTTTCTTCCACTGCCTCAAAGGAAGCTGCTAATCCTTTTGTTCGTCAACGTCCTTTGGCTGCCAAGTCAGCTGCCAATTCTCCTGCACCTCCATGGGCTAGTGGGTCAACCTCTTCATCTCAGTTGTTTCCAAAGAAGCAGGTGGATGGGGAGGGTCAACCATTGCTGCAGCAGCAACAGCAGCAGCAGCAGCAATTGGTTCCGTTGCAGGATTCATATATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGCTGAGCAGCATTTTTAATCAATTGGCAACACTTGTCTCCCAACAAGGGGAAGTCGCCATCAGGATTGATGAGAACATGGACGATACATTGGCAAACGTAGAAGGGGCACAGGGGGCTTTGCTCAAATATCTGAACAGTATATCTTCTAATAGGTGGCTGATGATCAAGATATTCTTTGTATTAATTTTTTTTCTCATGGTTTTCCTATTTTTTGTGGCATAG 1014 0.4576 MYVKSAQSSFRDRTQEFQSIAERLKKSVSSGSGINGPSSSSRSEDQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQLVSNARNDSGNISSDTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKEAANPFVRQRPLAAKSAANSPAPPWASGSTSSSQLFPKKQVDGEGQPLLQQQQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2005 337 CDD SNARE_syntaxin5 248 326 - -
Mibi08g2005 337 MobiDBLite consensus disorder prediction 21 47 - -
Mibi08g2005 337 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Mibi08g2005 337 PANTHER SYNTAXIN 50 329 IPR045242 -
Mibi08g2005 337 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mibi08g2005 337 MobiDBLite consensus disorder prediction 193 235 - -
Mibi08g2005 337 SUPERFAMILY t-snare proteins 54 300 IPR010989 GO:0016020|GO:0016192
Mibi08g2005 337 Gene3D - 50 300 - -
Mibi08g2005 337 FunFam Syntaxin-32 like 50 300 - -
Mibi08g2005 337 Pfam SNARE domain 282 333 IPR000727 -
Mibi08g2005 337 MobiDBLite consensus disorder prediction 203 235 - -
Mibi08g2005 337 SMART tSNARE_6 240 307 IPR000727 -
Mibi08g2005 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2005 Mibi-ChrMibi08 37305846 37309577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2005 1 337 SNARE and Associated Proteins AT3G24350 65.928 6.11e-151 427