Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi08g1997 | ATGCTTTCCCATAATTATCGTCATCTACTCTTCTCACTTCGTCCTCTGTCACTAAGGCCAAATCTTCTTCCATCACTTGTAGCTCAAAATCAACTCTCCTTTTCCTCTTCATCACAATCATGGCTATCTATGCCCGGTAACTCCATCATCGATTGGCCATCACTACCAATCCCAGAACCCAACCCCAACCCTAAATCGAACGCCGTCTCTAACTTCTCGCGGGACGATTTCTCCGTCATTGCCAATCTCTTTGTCGATCCTTCCATATCTCAGGGTACGGCTCTTGATAATGCGCTCGATGAGGCTGGCATTGAACCCGATTCGGTTTTGCTCCAAGCGGTATTTGATCATTTCGGTTCTTCCCCAAAGTTATTGCATTCGCTGTTCCTTTGGGCTCAGAGGCGACCAGGGTTTAGGCCCAGAGTCGCGCTTTTCAACTCTATGATTAATGTTCTTGCCAAATCGAGGGACTTTGACTCGGCTTGGATTTTGCTTCTTCAATGGATTGATCGCCATGAGGAAGACGCTTTCGTTTCTGGGGATACCTTTGCTATAATGATCAGACGGTATGCACTTGCAGGTATGCCGCAACCTGCAATTCGAACATTTGAGTATGCTAGAAATTTAAAGTCAATCATGGATTCGGATTCAGAAATGAGATTGTTTGAGATATTGTTGGATTCACTGTGTAAAGAAGGGTCTGTCACAGCAGCTTCAGAGTATTTCCTTCGTAGAAAGAAGATGGACACATCTTGGGTCCCATCAGTTCGGATTTACAATATTATGCTAAATGGATGGTTTCGATCAAGGAAACTCAAACATGCCGAGAGATTTTGGGAGGAGATGAAGAAGGAGAATGTAAGACCAAGTGTCGTGACTTATGGCACCCTTGTGGAAGGATATTGCCGGATGCGTCGTGTTGAAAAGGCAATTGAATTGGTTAATGATATGACCAAACTTAGAATTGAACCGAATGCAATTGTGTATAATCCAATAATCGATGCTTTAGCAGAGGCTGGGAGATTCAAAGAGGCTATGGGGATGCTGGAGCGCTTTCTTGTTTTAGAAACAGGCCCAACTAACTCAACTTACAATTCTTTGGTGAAGGGATTTTGTAAGGCAGGAGATCTTGTCGGTGCCAGTAAGATTCTTAAGATGATGATAAGTAGGGGTTTCATCCCCAGTCCCACCACCTATAACTACTTCTTTAGGTACTTTTCAAAATGTGGGAAAGTTGATGAGGGTATGAACTTGTATACCAAGATGATTGATTCTGGTTATACCCCTGATCGGCTTACATATCATCTTTTAATGAAGATGCTATGTGAAGAGGGGAAATTGAACTTGGCAGTTCAAGTTAGTAAGGAAATGAGGCATGGGGGATATGACATGGACCTTGCCACAAGTACTATGTTGGTTCATTTGCTTTGCAAAATGCATCGATTCGAAGAGGCTTTTGCAGAATTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTCACGTTTAAGAGAATGAATAGTGCATTAAAGAAGCGAGGGATGGTTGAAATGGCACGAAAACTATGCAGCTTGATGTCTTCTGTCCCTCATTCTAGGAAGTTGCCAAATACATATGTTGAAGACATAGATGAAGCGCATGCCCGGAGACAATCTATAATGCAGAAGGCCAAGGCATTTTCTGACATACTGAAAAACACCAATGACCCCAGAGAACTCGCCAAATATAGAAGCTCACCAGAAAATGTTGTCTCCAGCGCCGAGTGTTTGATGGATAATATTAAGAAAAGGATAAAGAAGCCATGA | 1809 | 0.429 | MLSHNYRHLLFSLRPLSLRPNLLPSLVAQNQLSFSSSSQSWLSMPGNSIIDWPSLPIPEPNPNPKSNAVSNFSRDDFSVIANLFVDPSISQGTALDNALDEAGIEPDSVLLQAVFDHFGSSPKLLHSLFLWAQRRPGFRPRVALFNSMINVLAKSRDFDSAWILLLQWIDRHEEDAFVSGDTFAIMIRRYALAGMPQPAIRTFEYARNLKSIMDSDSEMRLFEILLDSLCKEGSVTAASEYFLRRKKMDTSWVPSVRIYNIMLNGWFRSRKLKHAERFWEEMKKENVRPSVVTYGTLVEGYCRMRRVEKAIELVNDMTKLRIEPNAIVYNPIIDALAEAGRFKEAMGMLERFLVLETGPTNSTYNSLVKGFCKAGDLVGASKILKMMISRGFIPSPTTYNYFFRYFSKCGKVDEGMNLYTKMIDSGYTPDRLTYHLLMKMLCEEGKLNLAVQVSKEMRHGGYDMDLATSTMLVHLLCKMHRFEEAFAEFEDMIRRGIVPQYLTFKRMNSALKKRGMVEMARKLCSLMSSVPHSRKLPNTYVEDIDEAHARRQSIMQKAKAFSDILKNTNDPRELAKYRSSPENVVSSAECLMDNIKKRIKKP | 602 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi08g1997 | 602 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 290 | 324 | IPR002885 | - | |
| Mibi08g1997 | 602 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 255 | 289 | IPR002885 | - | |
| Mibi08g1997 | 602 | PANTHER | PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN | 137 | 284 | - | - | |
| Mibi08g1997 | 602 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | IPR002885 | - | |
| Mibi08g1997 | 602 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 465 | 499 | IPR002885 | - | |
| Mibi08g1997 | 602 | Gene3D | Tetratricopeptide repeat domain | 387 | 458 | IPR011990 | GO:0005515 | |
| Mibi08g1997 | 602 | Gene3D | Tetratricopeptide repeat domain | 459 | 530 | IPR011990 | GO:0005515 | |
| Mibi08g1997 | 602 | Gene3D | Tetratricopeptide repeat domain | 221 | 386 | IPR011990 | GO:0005515 | |
| Mibi08g1997 | 602 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 395 | 429 | IPR002885 | - | |
| Mibi08g1997 | 602 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 430 | 464 | IPR002885 | - | |
| Mibi08g1997 | 602 | TIGRFAM | PPR: pentatricopeptide repeat domain | 258 | 290 | IPR002885 | - | |
| Mibi08g1997 | 602 | TIGRFAM | PPR: pentatricopeptide repeat domain | 292 | 326 | IPR002885 | - | |
| Mibi08g1997 | 602 | TIGRFAM | PPR: pentatricopeptide repeat domain | 327 | 351 | IPR002885 | - | |
| Mibi08g1997 | 602 | TIGRFAM | PPR: pentatricopeptide repeat domain | 363 | 395 | IPR002885 | - | |
| Mibi08g1997 | 602 | TIGRFAM | PPR: pentatricopeptide repeat domain | 433 | 464 | IPR002885 | - | |
| Mibi08g1997 | 602 | TIGRFAM | PPR: pentatricopeptide repeat domain | 470 | 499 | IPR002885 | - | |
| Mibi08g1997 | 602 | TIGRFAM | PPR: pentatricopeptide repeat domain | 398 | 430 | IPR002885 | - | |
| Mibi08g1997 | 602 | Pfam | PPR repeat | 433 | 461 | IPR002885 | - | |
| Mibi08g1997 | 602 | Pfam | PPR repeat | 328 | 351 | IPR002885 | - | |
| Mibi08g1997 | 602 | Pfam | PPR repeat | 469 | 497 | IPR002885 | - | |
| Mibi08g1997 | 602 | Pfam | PPR repeat | 145 | 167 | IPR002885 | - | |
| Mibi08g1997 | 602 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 360 | 394 | IPR002885 | - | |
| Mibi08g1997 | 602 | Gene3D | Tetratricopeptide repeat domain | 80 | 220 | IPR011990 | GO:0005515 | |
| Mibi08g1997 | 602 | SUPERFAMILY | HCP-like | 254 | 453 | - | - | |
| Mibi08g1997 | 602 | Pfam | PPR repeat family | 254 | 303 | IPR002885 | - | |
| Mibi08g1997 | 602 | Pfam | PPR repeat family | 360 | 404 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi08g1997 | 126 | 546 | Glycosyltransferase | AT1G05670 | 24.313 | 8.09e-41 | 156 |