Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1993 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAAAGGGATTTGAAGGCTACTGCTCAGGCTTTCCTAGCTGAAGGAAAAGTATCATCCGATCCTGTCGCTATTGATGCTCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTCATCGCTCGTACTAATGAGAAGCATTCAGAGGTTGCTGCATCTTATATCGAGACACAGTTACTTAAGGGAAGGGAGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCACAACCCCAGCAGTCACAGCAGCAGCAGCAGCAGCAACAACACATGCAGATCCAACAACTCCTGATGCAGAGGCATGCACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACATCAGCAGCAGCAGCAGCAACAGCAACAGTCCCAACAACAGCAGCCACCACCGCAACAGCAGAGAAGGGATGGATCTCATCTCTTAAATGGCAATGCAAATGGGGTAGTTGAGAACCCACTGATGCGGCAAAACCCTGGTACTGCAAATGCGCTGGCCACAAAGATGTATGAGGAGAGATTAAAACCGCCTCTTCAGAGGGATGCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAGTCATGCCTCCATATTGAAGTCAGCTGCAGCTTCTGGCCAACCTTCAGGGCAAGTGTTGCATGGTGGAATGTCTCATCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTGCTCCGGATATAAAGAGCGAGATAAATCCTGTTTTAAATCCTAGAGCTGCAGGTCCTGAAGGATCATTGATAGGAATTCCAGGATCGAATCAAGGTAGCAACAATTTGACTCTCAAGGGGTGGCCACTTAAAGGGTTGGATCAACTACGCTCTGGTCTTCTCCAACCGCAAAAGGCTTTTATGCAGGGCCCTCAACCCTTTCATCAGCTTCAAATGTTGTCACCGCAGCATCTTATGCTTGCTCAACAAAATCTTGCGTCACCATCTGCTAGTGATGATAGTAGACGAATTAGAATGCTTTTGAATAATAGGAATATGGGCCTTGGTAAGGATGGTCTTTCAAACCCCATTGGTGATGTGGTATCGAATGTGGGATCACCACTTCAAGCTGGAAGCCCTCTTTTGCCTCGTGGAGATACAGATATGCTAATGAAGGTAAAATTGGCTCAGTTACATCAGCAGCATCAACAACAGACTACCAATCAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACATCAAATCTTAGCATGCATCAGCAAGACAAAGTGGGGGGTATTGGTAGTGTCACGGCAGATGGGAACATGTCAAACTCTTTTAGAGCAAATGATCAGGCTTCCAAAAACCAGTCTGGGAGAAAGAGAAAGCAGCCAGTATCATCTTCTGGTCCTGCCAATAGCTCAGGAACGGCAAATACGACAGGCCCATCTCCAAGTTCAGCACCCTCAACCCCTTCAACTCATACTCCTGGAGATGTGATGTCGATGCCTGCTGTGCCTCATAATGGTAATTCTTCAAAGCCTCTTATGATGTTTGGCACTGACGGCAGTGGAACTCTTACATCACCTTCAAATCAGCTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACATGGATCGATTTGTTGACGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCACATGATGATACAGACCCTAGAGATGCTGTTGGTCGTTGTATGGATATAAGCAAAGGGTGCTTCTCATTTTCCGAAGTCAACTCTGTGCGAGCTAGTGCAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTCGCAAGTGGTGGCCACGACAAAAAGGCAGTCTTATGGTTTACAGATTCTCTAAAGCCAAAAGCTACTCTTGAGGAACACTCATCTTTGATAACTGATGTCCGTTTTAGTCCAAACATGCCCCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGAGAATCCTGGATATTCACTTCGCACCTTCACAGGACATTCTGCATCTGTTATGTCGCTAGATTTTCATCCTAATAAAGATGATCTGATCTGCTCTTGTGATGGCGATGGTGAAATACGATACTGGAGCATAAATAATGGCAGCTGTGCTAGAATCTCTAAGGGTGGCACTGCCCAGATGAGGTTTCAACCTCGCATAGGGAGGTATATTGCTGCTGCTGCAGAGAATGTTGTCTCCATACTTGATGTGGAAACACAAACATGCCAATATTCATTACAGGGGCATACAAAGCCAATACATTCTGTTTGCTGGGACCCAGCCGGGGAGTTGCTTGCATCAGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAATGTGTCCATGAGCTTAGCTGTAATGGCAATAAATTTCATTCTTGTGTTTTCCATCCCACATATTTATCATTGCTGGTTGTTGGATGTTACCAGTCTTTGGAGCTTTGGAACATGGCGGAGAACAAGACAATGACACTGTCTGCTCATGAAGGATTAATTGCTTCCTTGGCTGTCTCAAGTGTAACTGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2703 0.4595 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFLAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQQPPPPQPQQSQQQQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQQHQQQQQQQQQSQQQQPPPQQQRRDGSHLLNGNANGVVENPLMRQNPGTANALATKMYEERLKPPLQRDALDDAAMKQRFGENMGQLLDPSHASILKSAAASGQPSGQVLHGGMSHQQVQARSPQLPGSAPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPQKAFMQGPQPFHQLQMLSPQHLMLAQQNLASPSASDDSRRIRMLLNNRNMGLGKDGLSNPIGDVVSNVGSPLQAGSPLLPRGDTDMLMKVKLAQLHQQHQQQTTNQQQQLQQHALSNQQSQTSNLSMHQQDKVGGIGSVTADGNMSNSFRANDQASKNQSGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVMSMPAVPHNGNSSKPLMMFGTDGSGTLTSPSNQLWDDKDLELQADMDRFVDDGSLDDNVESFLSHDDTDPRDAVGRCMDISKGCFSFSEVNSVRASASKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKPKATLEEHSSLITDVRFSPNMPRLATSSFDKTVRVWDVENPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARISKGGTAQMRFQPRIGRYIAAAAENVVSILDVETQTCQYSLQGHTKPIHSVCWDPAGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYLSLLVVGCYQSLELWNMAENKTMTLSAHEGLIASLAVSSVTGLVASASHDKFVKLWK 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1993 900 MobiDBLite consensus disorder prediction 418 454 - -
Mibi08g1993 900 ProSitePatterns Trp-Asp (WD) repeats signature. 677 691 IPR019775 -
Mibi08g1993 900 SMART Lish 8 40 IPR006594 GO:0005515
Mibi08g1993 900 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Mibi08g1993 900 Gene3D - 748 900 IPR015943 GO:0005515
Mibi08g1993 900 Gene3D - 593 747 IPR015943 GO:0005515
Mibi08g1993 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 868 900 IPR001680 GO:0005515
Mibi08g1993 900 MobiDBLite consensus disorder prediction 461 521 - -
Mibi08g1993 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 783 823 IPR001680 GO:0005515
Mibi08g1993 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 647 IPR001680 GO:0005515
Mibi08g1993 900 MobiDBLite consensus disorder prediction 238 261 - -
Mibi08g1993 900 Pfam LisH 10 35 IPR006594 GO:0005515
Mibi08g1993 900 MobiDBLite consensus disorder prediction 139 183 - -
Mibi08g1993 900 SUPERFAMILY WD40 repeat-like 610 900 IPR036322 GO:0005515
Mibi08g1993 900 MobiDBLite consensus disorder prediction 238 265 - -
Mibi08g1993 900 Pfam WD domain, G-beta repeat 778 813 IPR001680 GO:0005515
Mibi08g1993 900 Pfam WD domain, G-beta repeat 697 734 IPR001680 GO:0005515
Mibi08g1993 900 Pfam WD domain, G-beta repeat 653 690 IPR001680 GO:0005515
Mibi08g1993 900 Pfam WD domain, G-beta repeat 616 647 IPR001680 GO:0005515
Mibi08g1993 900 Pfam WD domain, G-beta repeat 863 900 IPR001680 GO:0005515
Mibi08g1993 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 701 743 IPR001680 GO:0005515
Mibi08g1993 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 658 693 - -
Mibi08g1993 900 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 900 - -
Mibi08g1993 900 MobiDBLite consensus disorder prediction 418 556 - -
Mibi08g1993 900 SMART WD40_4 694 734 IPR001680 GO:0005515
Mibi08g1993 900 SMART WD40_4 609 648 IPR001680 GO:0005515
Mibi08g1993 900 SMART WD40_4 651 690 IPR001680 GO:0005515
Mibi08g1993 900 SMART WD40_4 776 814 IPR001680 GO:0005515
Mibi08g1993 900 SMART WD40_4 820 859 IPR001680 GO:0005515
Mibi08g1993 900 SMART WD40_4 861 900 IPR001680 GO:0005515
Mibi08g1993 900 MobiDBLite consensus disorder prediction 103 122 - -
Mibi08g1993 900 CDD WD40 612 900 - -
Mibi08g1993 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 701 739 - -
Mibi08g1993 900 Coils Coil 115 151 - -
Mibi08g1993 900 MobiDBLite consensus disorder prediction 86 122 - -
Mibi08g1993 900 MobiDBLite consensus disorder prediction 139 165 - -
Mibi08g1993 900 FunFam Transcriptional corepressor LEUNIG 744 900 - -
Mibi08g1993 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 868 900 - -
Mibi08g1993 900 MobiDBLite consensus disorder prediction 529 556 - -
Mibi08g1993 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 693 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1993 Mibi-ChrMibi08 37165834 37173787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1993 695 899 Miscellaneous Gene Families AT5G08390 25.714 7.95e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mibi08g1993 WD40 0.056 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1993 08 37165834 37173787 Mibi05g0693 05 6565446 6574067 CCT