Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1990 ATGCTGTGTAACTTCTCCGTACTTCGCCTTCAACTGGGTATACCTCCTTCCAATTCGAAGCTGAGTCAACCCAGGAAGTCAGGGATCTTATGTTTTGGTACAATGGATGAGAATGAACAGCTTAAAAGTGGTGGATTCATGAGTTCTGGTGAGAGTCGTCCTCCGAATCCCTTTGCCGCTGAATATCGACAATGCCTCAGCACCGACCGTGGGGCGGCACCTAGTAAGAGGTCCCTTGTTCGGCATCCTTCTCTTATGAAGACAAAGGTGTCTGAAGTATCTGCTGAGCCAGAACCTGTTATTGAAGATTGCAACTCTGACTTCTTACCAAACCTTCGTTCTGGAGCATGTACTGATATTGGGTTCCGCTCGAGCATGGAAGACGTGTATTTGTGCGTGGACAACTTTTTGCCAAATTATGGACCCAAGAACCACATAGATGGACCCAGTGCCTTTTACGGGGTATTTGATGGACATGGTGGAAAGCATGCTGCTGATTTTGCTTGTCATCATTTGCCAAAGTTTATTGTTGAGGATGAAAGCTTTCCGAGTGATATTGAAAGGATTGTTGCATCAGCATTTCTGCAGACAGACAAGGCTTTTGCTGAAGCTTGCATTCTTGATGCTGACCTTGCCTCTGGCACCACTGCTCTAGCTGCTCTTGTCATCGGAAGGTTGCTTTTGGTGGCAAATGCTGGAGATTGTCGGGCAGTGCTGTGCCGCCGTGGAAAAGCTATTGAAATGTCAAGGGATCACAAACCAACACATAGCAAAGAGAAGAAGCGCATTGAGGCATCCGGAGGTTATGTGTATGATGGGTATCTCAATGGGCAGCTCAGTGTAGCCCGTGCTCTAGGCGATTGGCACATGGAAGGAATGAAAGTCAGAGACGGTGGACCTCTCAGTGCAGAGCCTGAACTCATTACTGCAAATCTGACCGAAGAGGATGAGTTTCTCATCATGGGCTGTGATGGGATCTGGGATGTTTTTAGGAGCCAAAATGCCGTGGATTTCGCTAGGCGAAGACTTCAGGAGCATAATGATCCAGCCAGGTGTAGTAAGGACTTGGTTGATGAGGCTTTGAAGAGAAAGAGTGGAGACAATCTATCAGTGGTTGTGGTTTGCTTTCAGCAGCAGCCTCCGCCTAACTTGGTGGCACCGCGAGCTAGAGTGCAAAGGAGCTTCTCTGCTGAAGGCTTGAGAGAGTTGCAAAGCTTCTTGGATAGTTTGCATACTTGA 1239 0.4778 MLCNFSVLRLQLGIPPSNSKLSQPRKSGILCFGTMDENEQLKSGGFMSSGESRPPNPFAAEYRQCLSTDRGAAPSKRSLVRHPSLMKTKVSEVSAEPEPVIEDCNSDFLPNLRSGACTDIGFRSSMEDVYLCVDNFLPNYGPKNHIDGPSAFYGVFDGHGGKHAADFACHHLPKFIVEDESFPSDIERIVASAFLQTDKAFAEACILDADLASGTTALAALVIGRLLLVANAGDCRAVLCRRGKAIEMSRDHKPTHSKEKKRIEASGGYVYDGYLNGQLSVARALGDWHMEGMKVRDGGPLSAEPELITANLTEEDEFLIMGCDGIWDVFRSQNAVDFARRRLQEHNDPARCSKDLVDEALKRKSGDNLSVVVVCFQQQPPPNLVAPRARVQRSFSAEGLRELQSFLDSLHT 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1990 412 PANTHER PROTEIN PHOSPHATASE 2C 94 374 IPR015655 GO:0004722|GO:0006470
Mibi08g1990 412 Gene3D - 96 380 IPR036457 -
Mibi08g1990 412 FunFam Probable protein phosphatase 2C 22 97 379 - -
Mibi08g1990 412 Pfam Protein phosphatase 2C 116 368 IPR001932 -
Mibi08g1990 412 SMART PP2C_4 103 374 IPR001932 -
Mibi08g1990 412 CDD PP2Cc 113 376 IPR001932 -
Mibi08g1990 412 SUPERFAMILY PP2C-like 107 378 IPR036457 -
Mibi08g1990 412 ProSiteProfiles PPM-type phosphatase domain profile. 113 376 IPR001932 -
Mibi08g1990 412 ProSitePatterns PPM-type phosphatase domain signature. 152 160 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1990 Mibi-ChrMibi08 37125295 37135591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1990 48 410 PP2C-type Phosphatase Gene Family AT2G25620 69.415 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Mibi08g1990 PP2C 2.9e-71 CL0238