Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1963 ATGTTGGTGCTTGTTCTGTGTGTATCAGCCATGCTAGTGGAAGCATGTTCAGGCTCTATGATAGACCTTACAACATTCTCTTTCTCATCTTTTAGCCCTGAAAGTTGTAGCAAGGGTGATCTGCTGTGTATGGGGTCAGCGACATCAGGTGAGGGCCACTTGAGGCTCACTCCTGAGCCGTTGATCAATTCGAGTTTGACGTGGCCGCCTTCATTTGCGATGAACAAAATAGGAAGGGTATTGTATCCTCAAAGAGTTAGGGCATGGCCTGCCTTAATAAGTACCTCATTCACAATGAGGATAACTCCCATGGATAATAAGTCAACCATATCTGGTGATGGTCTTACTTTCGTTTTTGCAAGTGATCGTAATCCCTCACCACCTTCTAGCTACGGCTCTTCTCTTGGCTTATTTGATCATTCTACTCAAGGTGAATTTTCGCAACAAATGGCAGTTGAGTTTGACACATTCAAGAACGAGTTTGATCGAGATGGAAACCACATTGGAGTTGTCACAGGAAGCACCATAAGTCCAGTCACTACACAGAGTCTAAATTCCTATGGAATTAGACTAAACAGTGGACAAACTATTCAAGTCAAAATAGAGTACGATGGTTCCATTAACATGCTTTATGTCTCTCTTGGATACTCCGAAAGTCAGTTAATGAGCGTTCTCAATCTCACACTTGATCTGCCAAAATTTGTCCCGAACACAGTTTATGTTGGTTTCACTGCTTCCACTGGCAACACTTTGCCTGAAAGCCATGAAATTCTGAATTGGGTGTTCACTTCGGTGCCTTTACCCTCATCATATGGTAATAATAAGCCCAGCAAAATAGAGATCATTAAGACCATTCTCATCATTGTCATACCCATTTCTCTGGCCATCTTGGCGAGCTTATTTCCATTTATATGGGAAGCCTTGAAGAAAAGAAAGAAGATTGATGAGAAGGGTTGTGATGATAATAGGAAATATGATTCAGAATGCTGCTCATCAATGGTTGCTCCAATAGATATCCCCAAAGAGTTCACTTTCAAGCAATTGTATATAGCTACTGGCAGCTTCAGCAAGGAGAATCTTCTGGGAAGAGGTGGATTCGGTAGTGTTTATAAAGGCCTCCTTTTTAATCCCCCAAAAACCATAGCTGTCAAGAAGATTTCAGCAAACTCAAAACAAGGGGAAAGAGAGTATCTTGCTGAGATATGTACGATAGGCCGACTTAGGCACAAGAACATAGTACGGCTACTAGGGTGGTGCCATGAAGGTGAATATCTTCTCTTAGTATATGAGTACATGCAAAATGGAAGTTTAGATCGCTTCATAGGCAAGGAAACTCTAAACTGGCAAACAAGGCACAAGATATTAGTAGGACTTGCATCAGCATTACTCTACCTCCACGAAGAATGTGGAAACCCGGTGGTACACAGAGATGTTAAACCAAACAACATAATGCTAGACTCAAATTTTAACGCCTATCTAGGAGATTTTGGCCTTGCAAGATTGCTCCAAAATGAAGAATCAGTAATCACAAATCTAGCAGGAACTCCTGGATATTTGGCTCCAGAAATAGGCTTCACAGGAAAAGCCACACCAGATTCAGATGTTTATAGTTTTGGAATGGTAGTGCTTGAACTCATATGTGGAAGAAGATCAAAGAACACGGCTGAAGATAATAGTTTGGTGGACTATGTTTGGAATATGCATAGTGAGAATGCGTTGGTTGAATGTGTGGATGCATTATTAGGTGATGAGTTTGATGAGGAAGAAGTTAGAAGAGCATTGATGGTTGGATTGGCTTGTTTATCTCCAGATTCAGTGTTTAGGCCAAAAATGAGAAAAGTGGTGCACATTTTGCTAGATCCAAACGAGCCTTTGATGGAATTACCAATAGTGAGGCCTCTTGGAGTCTATGTGTCGGTTTCCTCATCTACTTCAACTAATTCTAACTTTGGCTCCAGAGGTGTGGACTCATTTCCGATTATTCAATCAGGAACAACATCTTTAGATGAAATTTCGATTGTGTATGATCAACCATGA 2037 0.4109 MLVLVLCVSAMLVEACSGSMIDLTTFSFSSFSPESCSKGDLLCMGSATSGEGHLRLTPEPLINSSLTWPPSFAMNKIGRVLYPQRVRAWPALISTSFTMRITPMDNKSTISGDGLTFVFASDRNPSPPSSYGSSLGLFDHSTQGEFSQQMAVEFDTFKNEFDRDGNHIGVVTGSTISPVTTQSLNSYGIRLNSGQTIQVKIEYDGSINMLYVSLGYSESQLMSVLNLTLDLPKFVPNTVYVGFTASTGNTLPESHEILNWVFTSVPLPSSYGNNKPSKIEIIKTILIIVIPISLAILASLFPFIWEALKKRKKIDEKGCDDNRKYDSECCSSMVAPIDIPKEFTFKQLYIATGSFSKENLLGRGGFGSVYKGLLFNPPKTIAVKKISANSKQGEREYLAEICTIGRLRHKNIVRLLGWCHEGEYLLLVYEYMQNGSLDRFIGKETLNWQTRHKILVGLASALLYLHEECGNPVVHRDVKPNNIMLDSNFNAYLGDFGLARLLQNEESVITNLAGTPGYLAPEIGFTGKATPDSDVYSFGMVVLELICGRRSKNTAEDNSLVDYVWNMHSENALVECVDALLGDEFDEEEVRRALMVGLACLSPDSVFRPKMRKVVHILLDPNEPLMELPIVRPLGVYVSVSSSTSTNSNFGSRGVDSFPIIQSGTTSLDEISIVYDQP 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1963 678 SUPERFAMILY Protein kinase-like (PK-like) 339 641 IPR011009 -
Mibi08g1963 678 SMART serkin_6 355 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g1963 678 PANTHER - 63 620 - -
Mibi08g1963 678 Gene3D Transferase(Phosphotransferase) domain 1 432 624 - -
Mibi08g1963 678 CDD STKc_IRAK 361 618 - -
Mibi08g1963 678 FunFam serine/threonine-protein kinase PBS1-like 323 431 - -
Mibi08g1963 678 Pfam Protein kinase domain 356 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g1963 678 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
Mibi08g1963 678 CDD lectin_legume_LecRK_Arcelin_ConA 40 264 IPR001220 GO:0030246
Mibi08g1963 678 Gene3D - 21 281 - -
Mibi08g1963 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Mibi08g1963 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 274 IPR013320 -
Mibi08g1963 678 FunFam probable L-type lectin-domain containing receptor kinase S.5 432 626 - -
Mibi08g1963 678 ProSitePatterns Protein kinases ATP-binding region signature. 361 385 IPR017441 GO:0005524
Mibi08g1963 678 ProSiteProfiles Protein kinase domain profile. 355 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi08g1963 678 Pfam Legume lectin domain 25 266 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1963 Mibi-ChrMibi08 36616838 36621048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1963 78 633 Receptor kinase-like Gene Family AT5G55830 39.535 2.46e-116 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Mibi08g1963 Pkinase 3e-47 CL0016