Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1960 ATGCACTTTAACCTTTTCTTAGATAAATTTTGTGTGAACTTCTCTAACCCTAACTTTACTTCCTATTCTCTTTCGGAATCTTCTATTCTCGCAGAACCAATGGGAGAAACTAAGGATGAAGGATACGAGGAAGAGCTTCTTGACTACGAAGAGGAGGAAGACAAGGCGCCCGATTCCGTTGGGGCTAAAGTCAACGGTGAAGCGGCCAAGAAGGGATATGTAGGTATACACAGTTCCGGATTCAGAGACTTCCTTTTGAAGCCAGAACTCCTCCGGGCTATTGTGGACTCTGGATTTGAGCATCCATCCGAAGTTCAACATGAGTGTATACCTCAAGCAATCCTTGGAATGGATGTATTGTGTCAAGCTAAATCCGGAATGGGGAAAACTGCTGTGTTTGTGCTTTCAACTTTGCAACAAATTGATCCTGTTGCTGGCCAAGTTTCTGCCCTTGTTTTGTGTCATACAAGGGAATTGGCTTACCAGATATGTCACGAGTTTGAGAGGTTCAGCACCTACTTGCCTGATCTCAAGGTTGCTGTTTTCTATGGCGGTGTCAACATTAAAGTTCACAAGGATCTGTTAAAAAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATATTAGCGTTGACCAGGGATAAGGACCTTTCTCTAAAGAATGTTAGGCATTTCATTTTGGACGAATGTGATAAGATGCTGGAATCACTGGACATGAGAAGAGACGTGCAAGAAATTTTCAAGATGACTCCTCATGATAAGCAAGTCATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAGGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACCCTTCATGGACTTGTTCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGCAAGCTGAATGATCTTCTTGATGCACTTGACTTCAATCAAATAGTCATCTTCGTGAAAAGTGTTAGTAGAGCTGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCTGGCATGTCCCAGGAGGAAAGGTTAAAACGATACAAAGGATTCAAAGAGGGGCATACTCGGATTCTTGTAGCTACAGATCTGGTTGGAAGGGGCATTGATATAGAACGTGTCAACATAGTCATAAACTATGACATGCCTGATTCTGCAGACACATACTTGCACAGGGTTGGCAGGGCGGGAAGATTTGGAACCAAGGGTCTTGCAATTACATTTGTTTCATGTGCTTCAGATGTTGATGTCCTCAACAATGTTCAATCAAGGTTTGAGGTGGACATAAAACAGCTCCCCGAGCAGATTGATACGTCCTCATATATGCCATCATAG 1383 0.4259 MHFNLFLDKFCVNFSNPNFTSYSLSESSILAEPMGETKDEGYEEELLDYEEEEDKAPDSVGAKVNGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCASDVDVLNNVQSRFEVDIKQLPEQIDTSSYMPS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1960 460 Gene3D - 75 291 IPR027417 -
Mibi08g1960 460 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Mibi08g1960 460 Pfam Helicase conserved C-terminal domain 309 416 IPR001650 -
Mibi08g1960 460 FunFam DEAD-box ATP-dependent RNA helicase 56-like 67 285 - -
Mibi08g1960 460 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 78 435 - -
Mibi08g1960 460 Pfam DEAD/DEAH box helicase 104 269 IPR011545 GO:0003676|GO:0005524
Mibi08g1960 460 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 456 IPR001650 -
Mibi08g1960 460 SMART ultradead3 98 299 IPR014001 -
Mibi08g1960 460 CDD SF2_C_DEAD 296 425 - -
Mibi08g1960 460 Gene3D - 292 459 IPR027417 -
Mibi08g1960 460 CDD DEADc_DDX39 78 285 - -
Mibi08g1960 460 SMART helicmild6 335 416 IPR001650 -
Mibi08g1960 460 FunFam DEAD-box ATP-dependent RNA helicase 292 460 - -
Mibi08g1960 460 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 283 IPR014001 -
Mibi08g1960 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 428 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1960 Mibi-ChrMibi08 36587027 36592819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1960 34 460 Eukaryotic Initiation Factors Gene Family AT5G11200 83.156 0.0 757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1960 08 36587027 36592819 Mibi05g0720 05 6802252 6808612 CCT
Mibi08g1960 08 36587027 36592819 Mibi08g1960 08 36587027 36592819 ECH
Mibi05g0720 05 6802252 6808612 Mibi08g1960 08 36587027 36592819 ECH