Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1957 ATGGTAAAAGCAAACAAGTTCAGAGGAGTGAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAAATCCGCCATCCATTACTGAAGAGACGTGTGTGGCTGGGGACATTTGAGACGGCTGAGGCAGCTGCAAGGGCATATGACCAAGCTGCCATATTGATGAATGGTCAAAATGCGAAGACCAATTTCCCACGTTCAGTATATCATCATGAGGCACAAGAGAATAATAGTGCAAGTGCTTGTTTATCACCAAAGGCTCTTTCAGAACTTCTAAGCACGAAGCTGAAAAAGTGTTGCAGAGCACCATCGTCTCCTTCCCTAACTTGTTTAAGGCTTGACTCTGACAATTCTCACATTGGTGTGTGGCAGAAAGGAGCTGGACCACGTTCACACTCTAACTGGGTTGTCAGGGTCGAACTTGGTAATAACAAGGATCATCTTCACCAGGTCAAGGAAGGTGAGTCCTATGATAATTCTTCGGTGATGAGGTCATCATCAGTGCCTGAGATTGAAGAGAACAGTCAACAAACAGGTAATAATATGGTGGAGGATGAAGAGGACAGCGTTACAATGCAAATGATTGAAGAACTTCTTAACTGGAACTATCCTTCCACTTCCTCCCCTGCTTCTCAGGAGTAA 636 0.4591 MVKANKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPRSVYHHEAQENNSASACLSPKALSELLSTKLKKCCRAPSSPSLTCLRLDSDNSHIGVWQKGAGPRSHSNWVVRVELGNNKDHLHQVKEGESYDNSSVMRSSSVPEIEENSQQTGNNMVEDEEDSVTMQMIEELLNWNYPSTSSPASQE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1957 211 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Mibi08g1957 211 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 161 - -
Mibi08g1957 211 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Mibi08g1957 211 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Mibi08g1957 211 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Mibi08g1957 211 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Mibi08g1957 211 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
Mibi08g1957 211 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Mibi08g1957 211 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Mibi08g1957 211 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1957 Mibi-ChrMibi08 36555382 36556162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1957 1 208 AP2-EREBP Transcription Factor Family AT5G25390 56.731 3.68e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi08g1957 AP2 1.8e-12 CL0081