Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1942 ATGCGGACGTACGTACTAGCTAAACAAAAACCAACAGGTCACATGGAGCTTCAGTTAGGTCTGGCTCTCCCAACTCAAAATCTTATCCAGGGATTTAACCTAATTACCAAACATGGCTTGGAATGTTCAGAGTCAAGGAGGCCAAGTTTCTGTATTGAAAGTCACAGGCAAGTAAAAAACAAGCGTAGTTTTGAAGAGTCATTTGGGTGTTCTTCAAAAACTCTGCCTTTACTGGTATGGAATGGACAGCCAAACGAGGAAGATGATGACAGTGGTGATGGGAAGAGAAACAGAAACACTCATATGGAAAAGGAGAATAATGAAGAAGAAAACAGTTTAGTGGGATGGCCACCCATTAAATCATGGAGGAGGAAGAAAGTCCATCATCAACAACACCCAAGAGTCCCAATCATCAGGAACGATGGGACGCTAACTGAGAATGGAAATAGAGGATCAAACTCTTCATATGTTAAGGTTAAGATGGAAGGAATAGCTATAGGACGCAAGATAGATTTGAGGCTACACAGTTCTTATGAGAGTCTTGCAAGTGAGTTAATTAGCATGTTTGATCAAAACCAGAAGCCTGAGGAAGATAATGAAAGTTTTACACTCAAGTATCAGGACGAAGAAGGGGACTGGCTGGTTGCTGGAGATGTTCCTTGGCAATCCTTCATTGATACTGCTAAACGCTTGGAGATAGTAAGGAGTGGCGTTGAAGAATCGAATCCACTTGACAGCAAATAG 744 0.418 MRTYVLAKQKPTGHMELQLGLALPTQNLIQGFNLITKHGLECSESRRPSFCIESHRQVKNKRSFEESFGCSSKTLPLLVWNGQPNEEDDDSGDGKRNRNTHMEKENNEEENSLVGWPPIKSWRRKKVHHQQHPRVPIIRNDGTLTENGNRGSNSSYVKVKMEGIAIGRKIDLRLHSSYESLASELISMFDQNQKPEEDNESFTLKYQDEEGDWLVAGDVPWQSFIDTAKRLEIVRSGVEESNPLDSK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1942 247 Gene3D - 149 244 - -
Mibi08g1942 247 ProSiteProfiles PB1 domain profile. 154 241 IPR000270 GO:0005515
Mibi08g1942 247 SUPERFAMILY CAD & PB1 domains 150 233 - -
Mibi08g1942 247 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 236 IPR003311 GO:0005634|GO:0006355
Mibi08g1942 247 Pfam AUX/IAA family 51 236 IPR033389 -
Mibi08g1942 247 MobiDBLite consensus disorder prediction 88 110 - -
Mibi08g1942 247 MobiDBLite consensus disorder prediction 79 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1942 Mibi-ChrMibi08 36387204 36389223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1942 143 236 B3 DNA Binding Superfamily AT3G61830 38.947 6.24e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mibi08g1942 AUX_IAA 2.9e-36 CL0072