Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1918 ATGGCGTACCACAACCACCATCTCTCTCAGGAGCTACCGCTCCACCATTTCACAGAGCAACCTCACAACCATCATCAGCAGAACCAGTCGCTGCTATTGCAGGAGCCAACCACTAAACCCCCCTCCGATCCTCACCACCCTCTTCAAACCGCCCCCAATTGGCTCAACAACGCCCTCCTCCGTACTCACTACACCGACAACAACAACACCACCACCACCACCAATAATTCCACCCCTCCCCCTAACAACGCCTCCTCCAATTTCCTCAACCTCCACACCGCCCCCTCCGACTCCAATTGGCTTTCCCGCCCCATTCTCAACCGCAACCACAGCCACAGCGACGACGTCATCGACGACTCCATCATCGCCCCCGCCGACTCTGCCGATTTGAAGCCCACCGCTGATAAGGCCGACGCCGCCGCCGCCGCCGGGGGGGACGGTTTGATGAGCTGGCAGAATGCTAGGTTCAAGGCCGATATTCTTTCTCATCCCTTGTACGAACAGCTGTTGTCGGCTCATGTGGCTTGCCTCCGCATCGCTACGCCTGTGGACCAGTTGCCCAGGATCGATGCTCAGCTCGCTCAGTCGCAGAATGTGGTTGCCAAGTACTCCGCGTTAGGCCATGGGGGCCAGACCATGGTTGGGGACGATAAGGAACTCGATCAGTTCATGTCGCACTATGTCTTGTTGCTATGTTCATTCAAAGAACAACTTCAACAACATGTCAGAGTCCATGCAATGGAAGCAGTAATGGCCTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGGGTTTCACCAGGAGAAGGCACAGGGGCAACGATGTCAGATGATGAAGATGATCAGGTGGACAGTGATGCTAACCTGTTTGATGGTAGTTTGGATGGTTCAGACATGGGATTTGGTCCCCTTATTCCAACGGAGAACGAAAGGTCCCTCATGGAGCGTGTAAGGCAGGAATTAAAGCATGAACTGAAACAGGGTTACAAGGAGAAAATTGTGGACATTAGAGAGGAAATTCTGCGCAAGAGACGAGCAGGGAAACTTCCTGGGGACACAACCTCTGTTCTTAAATCTTGGTGGCAGTCACATTCCAAATGGCCTTACCCTACTGAGGAAGACAAGGCAAGGTTGGTTCAGGAAACTGGTTTGCAATTGAAGCAGATTAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCCACCTCAACGGTTTTGAAGAGCAAGCGCAAAAGGTGA 1257 0.5227 MAYHNHHLSQELPLHHFTEQPHNHHQQNQSLLLQEPTTKPPSDPHHPLQTAPNWLNNALLRTHYTDNNNTTTTTNNSTPPPNNASSNFLNLHTAPSDSNWLSRPILNRNHSHSDDVIDDSIIAPADSADLKPTADKADAAAAAGGDGLMSWQNARFKADILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGGQTMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1918 418 SUPERFAMILY Homeodomain-like 343 406 IPR009057 -
Mibi08g1918 418 Pfam KNOX2 domain 214 264 IPR005541 GO:0003677|GO:0005634
Mibi08g1918 418 ProSiteProfiles 'Homeobox' domain profile. 341 404 IPR001356 GO:0003677
Mibi08g1918 418 MobiDBLite consensus disorder prediction 65 91 - -
Mibi08g1918 418 ProSiteProfiles ELK domain profile. 321 341 IPR005539 GO:0003677
Mibi08g1918 418 SMART KNOX2_2 210 265 IPR005541 GO:0003677|GO:0005634
Mibi08g1918 418 MobiDBLite consensus disorder prediction 264 283 - -
Mibi08g1918 418 Pfam KNOX1 domain 157 197 IPR005540 GO:0003677|GO:0005634
Mibi08g1918 418 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 403 - -
Mibi08g1918 418 CDD homeodomain 344 405 IPR001356 GO:0003677
Mibi08g1918 418 Pfam Homeobox KN domain 361 400 IPR008422 GO:0003677|GO:0006355
Mibi08g1918 418 SMART ELK_2 321 342 IPR005539 GO:0003677
Mibi08g1918 418 FunFam homeobox protein knotted-1-like 3 isoform X1 342 403 - -
Mibi08g1918 418 Gene3D - 340 412 - -
Mibi08g1918 418 Pfam ELK domain 321 342 IPR005539 GO:0003677
Mibi08g1918 418 SMART KNOX1_2 154 198 IPR005540 GO:0003677|GO:0005634
Mibi08g1918 418 MobiDBLite consensus disorder prediction 23 37 - -
Mibi08g1918 418 MobiDBLite consensus disorder prediction 21 51 - -
Mibi08g1918 418 SMART HOX_1 343 408 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1918 Mibi-ChrMibi08 36114671 36117739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1918 1 418 Homeobox Transcription Factor Family AT5G25220 66.890 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mibi08g1918 KNOX2 1.1e-21 No_clan