Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1905 ATGTCTGTTTTTATTTTTACACGAGGATTTCTTTGTTCCTTGCAGAAAATGAGTAGCCTGGCTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAGTTTATAATCTAGATGAGTCAGATGATGATATCGATTTTTTGCCTGGGAAACCTGGGAGAGCTGAGGAAACGTTTGAGAGGATAGTTAGAAGTGATGTTAAAGAGAATTCATGCCAAGCCTGTGGAGAAAGTGAAGATCTTCTTAGCTGTGAAACTTGTACCTATGCTTTCCATCCTAAGTGCTTACTTAGACCGCTTAAAGCTCCACTTCCGGATAGTTGGAGGTGCCCTGAATGTGTTAGCCCGTTAAGTGATATTGAAAAGATATTAGATTGTGAAATGCGCCCTACTGTAGCTGGTGATGGCGAGGCCTCAAAAACAAGCTCAAAGCAAACTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTTTCATATTTGCACTGCGCGTGGGTTTCAGAGAAAGAGTTTCTGAAAGCTTTTAAGTCAAATCCTCGTCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCCTCAAATACTTCTGATGAAGACTTCGTAGCTATTCGACCTGAATGGACCATGGTTGATCGTATACTTGCTTGCAGGGGTCATGATGATGAAAAGGAATATCTAGTCAAATGGAAAGAGCTTTCATACGATGAATGCTATTGGGAGTCTGAGTCTGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTTACAAAATTTCAGTCTAGGTCTAGGAGAAGTGCTTCTAGTAAGCAGAAAAGTAGTGGTAAAGATGGTGCCGAAGAAAAAAAGCAGCAGAAAGAATTTCAACACTATGAACATAGTCCTAGCTTTCTTTCAGGCGGCAGCCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGTTTTTCTTGGTCTAAGCAAACGCATGTTATACTTGCCGATGAAATGGGACTAGGCAAAACCATACAAAGTATTGCTTTTTTAGCATCTCTTTTTGAAGAGAGAGTGTTTCCCCATTTAGTGGTTGCTCCCCTATCAACTCTTCGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAATGTTATTATGTATGTTGGATCTGCCCAAGCTCGAGCTGTTATAAGAGAGTATGAGTTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGCAAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTATTGACATCATATGAAATGATCAACTTCGACTCAGTATCGTTGAAACCTATAATGTGGGAGTGCATTATAGTTGATGAAGGCCACCGGCTTAAAAATAAGGATTCAAAGTTATTTTCTTCGTTGAAGCAATATTCAAGCAAACATCGTGTACTTTTGACTGGAACTCCTCTTCAGAATAACTTGGATGAACTTTTTATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAGGAGTTCCAGGAAGAGTTTAGAGATATTAATCAGGAGGAGCAGATATCAAGGCTTCACAAAATGTTGGCGCCACACCTTCTTAGAAGAGTGAAGAAAGATGTGATGAAGGAGTTACCCCCTAAAAAGGAACTTATTTTAAGAGTTGAGTTAAGCAGCAAACAGAAAGAGTATTATAAGGCAATTTTAACTCGTAATTATCAAATATTGACCCGTCGTGGTGGCGCACAGATTTCTCTTATCAATGTTGTTATGGAATTGCGCAAACTATGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATTGAAGATCCGAAAGAAGCATTCAAACAGCTACTGGAAACATCAGGGAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTAATATATTCACAATTTCAGCACATGCTTGACCTGTTGGAAGATTACTGTTCGTACAAGAGTTGGCATTATGAAAGGATAGATGGCAAGGTTGCTGGAGCTGAAAGACAGGTTAGGATAGATCGGTTTAATGCAAAAAATTCCTCGAGATTTTGCTTTCTCCTTTCAACCAGAGCTGGAGGATTGGGAATAAACCTCGCAACTGCTGACACTGTTATCATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAATAAGGTGTTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTGGTTGTTGGTAGGTTAAAGGCGCAAAACATTAATCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGAGGCTGGAAAATCCCGCCAAATTCATTATGATGATGCTTCCATAGACAGATTGTTGGATCGTGAGCAAGTTGGAGTTGAAGAAGCTGTATTGGATGATGAAGATGATGATGGATTTCTAAAGGCCTTTAAGGTGGCAAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCGGAGGAGGCAAGGAAAAAAGAAATGGAAAGTAAAAATGCTGTTAACAATTCAGATAGAGCAAATTATTGGGAGGATTTGCTGAGAGACAAATATGAAGAGCATAAAACTGAAGAGTTTAGTTCCTTAGGCAAGGGCAAGCGAAACCGCAAGCTGATGGCTTCTGTTGAGGAGGATGATCTTGCTGGCCTAGAAGATGTAAGTTCTGATGGTGAAGATGACAACTATGAAGCAGACCTTACTGATGGCGATTCAAATTCAACTGGAACTACTTCGGGTAGAAGGCCTTACAGAAAGAAAGCCCGAGCAGCTGATAGTACTGAGCCACTTCCTTTGATGGAAGGTGAAGGAAGATCATTCAGAGTTCTTGGTTTCAATCAAAGCCAGAGGGCTCAATTTGTGCAAATCTTGATGAGGTTTGGAGTTGGTGATTATGATTGGAAGGAGTTTACTCCCCGCTTGAAACAGAAGACATATGAAGAAATCAAAGAATATGGATTTCTTTTCTTGTCTCATATCGCTGAAGATATAACTGATTCTCCTACATTTTCAGATGGTGTTCCAAAAGAAGGACTTAGAATACATGATGTACTAGTTAGGATTGCAGTTCTTCTCTTGATAAGAGAGAAAGTGAAGTTTGCATCAGAAAAGGGCCCTGGAACTTTGCTTTACACAGATGACATCTTGTTGCGGTATCCTGGTTTGAAGGGTGGAAAGATATGGAAGGGGGAGCATGATATAGTGTTACTGCGTGCTGTGTTGAAGCATGGATATGGGAGGTGGCAAGCAATTGTGGATGACAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCGTGATAAATTTACCAGTTCCAGGACATGTTGGTACCCAGGCGCAAAATGGTGCAAATTCAACGAATGTTGAAGCACTGACCAACCAATCTGGGGAAAATGGTGGGAATGATACGGTAGCTGATGGTGTGCCTGGTTCTGGTGATGCTAGGAACCCAGCACAGCTATATCAAGAGTCTTCATTATTATATCATTTTAGAGATATGCAGAGAAGACAGGTCGAGTTTGTAAAAAAGAGGGTTCTGCTGTTGGAAAAGGGGCTATATGCTGAGTACCAGAAAGAATACTTTGGTGACCATAATACAAATGAAGCCATGAATGTAGAATTTAAAAACGAACCAAAGGATTCAAATCTCCCAAGCTATAAATCAGGGGAGATTGATAAGAAAATGATTGATCAACTGCCTCAATTAGAAGAAATAGCTTCGGAAGAATCTTCTGCTGCTGCTTGTGATAGTGACCCAAATCGATCGGAAGTGGTTCGACTTTACAATGAGATGTGCAAAATTGCGGAGGAAAACACCATTGCATTGGCTGGAGGACCAGCAGATGCAGGCTCGATGAAGAACTTGCCTCCCCTAGAAACTGTTTGTAAAGACATCAATAAAATTCTATCACCCACTAAACAAGATGATGGCCCTGCAGAAATGTCAATACCAAGTCCAGGTATCAAATCAGAGGCTTTACCGGAGGGTGAAGATGCTGGTGTCAAATTGTCCTCAACTCCTCAAGATGACAGCAAACCTGGCAATGCAGTTAACAATGAGGGAACAGATGTGGTGATAGGGTCCCATGAATTGAAAGAAAACGGTGACGGTGGAAAAGAAAACGGATTAGAGGGGAGGGGAGGTGATGTTGAAATGGGTGAAACCAGCAGTGATGCTGCGTTGGATGAGAACTTGGATAAACCTGATACGGGGTCCGTTGTCCCGGATGAATAG 4368 0.408 MSVFIFTRGFLCSLQKMSSLAERLRVRSDRKPVYNLDESDDDIDFLPGKPGRAEETFERIVRSDVKENSCQACGESEDLLSCETCTYAFHPKCLLRPLKAPLPDSWRCPECVSPLSDIEKILDCEMRPTVAGDGEASKTSSKQTFVKQYLVKWKGLSYLHCAWVSEKEFLKAFKSNPRLKTKVNNFHRQMASSNTSDEDFVAIRPEWTMVDRILACRGHDDEKEYLVKWKELSYDECYWESESDISAFQPEIERFTKFQSRSRRSASSKQKSSGKDGAEEKKQQKEFQHYEHSPSFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEERVFPHLVVAPLSTLRNWEREFATWAPQMNVIMYVGSAQARAVIREYEFYFPKKQKKIKKKKSGKIVSESKQDRIKFDVLLTSYEMINFDSVSLKPIMWECIIVDEGHRLKNKDSKLFSSLKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDPKEAFKQLLETSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKSWHYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGVEEAVLDDEDDDGFLKAFKVANFEYIDEVEAAAEEARKKEMESKNAVNNSDRANYWEDLLRDKYEEHKTEEFSSLGKGKRNRKLMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTTSGRRPYRKKARAADSTEPLPLMEGEGRSFRVLGFNQSQRAQFVQILMRFGVGDYDWKEFTPRLKQKTYEEIKEYGFLFLSHIAEDITDSPTFSDGVPKEGLRIHDVLVRIAVLLLIREKVKFASEKGPGTLLYTDDILLRYPGLKGGKIWKGEHDIVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPVINLPVPGHVGTQAQNGANSTNVEALTNQSGENGGNDTVADGVPGSGDARNPAQLYQESSLLYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYFGDHNTNEAMNVEFKNEPKDSNLPSYKSGEIDKKMIDQLPQLEEIASEESSAAACDSDPNRSEVVRLYNEMCKIAEENTIALAGGPADAGSMKNLPPLETVCKDINKILSPTKQDDGPAEMSIPSPGIKSEALPEGEDAGVKLSSTPQDDSKPGNAVNNEGTDVVIGSHELKENGDGGKENGLEGRGGDVEMGETSSDAALDENLDKPDTGSVVPDE 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1905 1455 CDD CD2_tandem 206 255 - -
Mibi08g1905 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 535 IPR027417 -
Mibi08g1905 1455 Pfam Chromo (CHRromatin Organisation MOdifier) domain 119 172 IPR023780 -
Mibi08g1905 1455 Pfam Chromo (CHRromatin Organisation MOdifier) domain 209 257 IPR023780 -
Mibi08g1905 1455 SMART ultradead3 298 511 IPR014001 -
Mibi08g1905 1455 CDD SF2_C_SNF 623 749 - -
Mibi08g1905 1455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 115 IPR013083 -
Mibi08g1905 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 793 IPR027417 -
Mibi08g1905 1455 SMART chromo_7 206 260 IPR000953 -
Mibi08g1905 1455 SMART chromo_7 115 191 IPR000953 -
Mibi08g1905 1455 SMART helicmild6 654 738 IPR001650 -
Mibi08g1905 1455 ProSiteProfiles Zinc finger PHD-type profile. 67 114 IPR019787 -
Mibi08g1905 1455 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 314 500 IPR014001 -
Mibi08g1905 1455 SMART DUF1086_2 928 1089 IPR009462 GO:0003677|GO:0006338
Mibi08g1905 1455 ProSitePatterns Zinc finger PHD-type signature. 70 111 IPR019786 -
Mibi08g1905 1455 MobiDBLite consensus disorder prediction 1382 1400 - -
Mibi08g1905 1455 MobiDBLite consensus disorder prediction 269 285 - -
Mibi08g1905 1455 MobiDBLite consensus disorder prediction 919 971 - -
Mibi08g1905 1455 Pfam SNF2-related domain 322 602 IPR000330 GO:0005524|GO:0140658
Mibi08g1905 1455 ProSiteProfiles Chromo and chromo shadow domain profile. 116 198 IPR000953 -
Mibi08g1905 1455 ProSiteProfiles Chromo and chromo shadow domain profile. 208 270 IPR000953 -
Mibi08g1905 1455 Pfam CHD subfamily II, SANT-like domain 951 1077 IPR009462 GO:0003677|GO:0006338
Mibi08g1905 1455 Pfam Helicase conserved C-terminal domain 625 738 IPR001650 -
Mibi08g1905 1455 MobiDBLite consensus disorder prediction 1404 1425 - -
Mibi08g1905 1455 SUPERFAMILY Chromo domain-like 82 192 IPR016197 -
Mibi08g1905 1455 MobiDBLite consensus disorder prediction 1438 1455 - -
Mibi08g1905 1455 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 68 1317 - -
Mibi08g1905 1455 MobiDBLite consensus disorder prediction 1347 1455 - -
Mibi08g1905 1455 Pfam PHD-finger 70 112 IPR019787 -
Mibi08g1905 1455 SMART DUF1087_2 858 923 IPR009463 -
Mibi08g1905 1455 Gene3D - 116 191 - -
Mibi08g1905 1455 MobiDBLite consensus disorder prediction 259 285 - -
Mibi08g1905 1455 MobiDBLite consensus disorder prediction 1168 1194 - -
Mibi08g1905 1455 Gene3D - 294 544 IPR038718 -
Mibi08g1905 1455 Gene3D - 1055 1188 - -
Mibi08g1905 1455 MobiDBLite consensus disorder prediction 919 940 - -
Mibi08g1905 1455 SMART PHD_3 69 112 IPR001965 -
Mibi08g1905 1455 Coils Coil 854 877 - -
Mibi08g1905 1455 Pfam CHD subfamily II, DUF1087 859 920 IPR009463 -
Mibi08g1905 1455 Gene3D - 196 257 - -
Mibi08g1905 1455 CDD CD1_tandem 118 188 - -
Mibi08g1905 1455 Gene3D - 545 769 IPR027417 -
Mibi08g1905 1455 SUPERFAMILY Chromo domain-like 196 260 IPR016197 -
Mibi08g1905 1455 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 628 789 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1905 Mibi-ChrMibi08 35965219 35989221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1905 324 799 RAD5 or RAD16-like Gene Family AT1G02670 22.980 5.29e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi08g1905 SNF2_N 4e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1905 08 35965219 35989221 Mibi05g0770 05 7188827 7204591 CCT