Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi08g1856 | ATGGCTGATTCCGACCACACTCCGATAATAAGCACCACCAACGAGTCTTGCTCTGGCGGAAAGTACAAAGGAGTGAGAAAGCGTAAATGGGGGAAATGGGTTTCTGAAATCAGACTCCCTAACAGCCGAGAGCGCATTTGGTTGGGCTCCTATGACTCCCCGGAGAAGGCGGCTAGGGCCTTCGACGCCGCCCTCTTCTGCCTCCGTGGCCCCCACGCCACCTTCAACTTCCCCCAAACCCCTCTTGAGTTAGAGGGTGGTCATCATCATCACCATCGCAACAACAATTCTCTTTCTGCTCAGGAAATCCAAGAGCTGGCAGCTAAATTTGCCAACGACCACCAGCGGGACCCACCCATAATGGCTCTCCAGCAGCAGCAATCTTCAGAATCAGATGGGGTTACTACAACTACAACTACTACTACTGCAGAGAGTAGTGGTGATCCTGTGGAGGTGGACCATGGTGTTGGAGAGATAAGAGCCATTAGCGACTGGTCCTTTTTGAAGTCACTTGATGATGACATTGGCTCCTCTAATTCTGCTCATTCTAATGGTGGATTCTACAAGATGCACTCTGGTGAGTTATTGTTTCCCACCTCACCCCCTCATTTGCCCCTTGATTATAATGTTTGTGACTCCCACCATCTCGTTGGCGACTCTTCCATGGAATATTCCGATGATGCTTTCTCCCAACAATCATTCGTCCTTTGGAACTTTTGA | 720 | 0.4986 | MADSDHTPIISTTNESCSGGKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGPHATFNFPQTPLELEGGHHHHHRNNNSLSAQEIQELAAKFANDHQRDPPIMALQQQQSSESDGVTTTTTTTTAESSGDPVEVDHGVGEIRAISDWSFLKSLDDDIGSSNSAHSNGGFYKMHSGELLFPTSPPHLPLDYNVCDSHHLVGDSSMEYSDDAFSQQSFVLWNF | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi08g1856 | 239 | SMART | rav1_2 | 21 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
| Mibi08g1856 | 239 | CDD | AP2 | 21 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
| Mibi08g1856 | 239 | SUPERFAMILY | DNA-binding domain | 21 | 79 | IPR016177 | GO:0003677 | |
| Mibi08g1856 | 239 | Pfam | AP2 domain | 21 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
| Mibi08g1856 | 239 | ProSiteProfiles | AP2/ERF domain profile. | 21 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
| Mibi08g1856 | 239 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 20 | 163 | - | - | |
| Mibi08g1856 | 239 | MobiDBLite | consensus disorder prediction | 122 | 147 | - | - | |
| Mibi08g1856 | 239 | FunFam | Ethylene-responsive transcription factor 2 | 21 | 79 | - | - | |
| Mibi08g1856 | 239 | Gene3D | AP2/ERF domain | 20 | 79 | IPR036955 | GO:0003700|GO:0006355 | |
| Mibi08g1856 | 239 | MobiDBLite | consensus disorder prediction | 122 | 152 | - | - | |
| Mibi08g1856 | 239 | PRINTS | Ethylene responsive element binding protein signature | 22 | 33 | IPR001471 | GO:0003700|GO:0006355 | |
| Mibi08g1856 | 239 | PRINTS | Ethylene responsive element binding protein signature | 44 | 60 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi08g1856 | Mibi-ChrMibi08 | 35437696 | 35438415 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi08g1856 | 21 | 117 | AP2-EREBP Transcription Factor Family | AT1G19210 | 69.072 | 1.77e-42 | 140 |
Transcription factors information