Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1833 ATGGGTTGGGGTCATCTGGGAAGAACCGGGCAATCCAGCTCGGGTGAGGCGAGTACCAGTGCGGAGGCTTCTTCCACCAACGCCCAACAATCCCTACCTCGGAGATTCCCTCTTGCTGCTCAGCCTGAAATCATGAGAGCCGCTGAGAAGGATGATCAGTATGCCTCTTTCCTCTATGAAGCCTGTCGCGATGCCTTCCGTCACCTCTTTGGTACTAGAGTTGCAGTTACCTACCAAAGTGAGGTCAGCACTTTACTTCATGAATTGAATCCGTGCCCTCTCAGTACAAACCTATTGGGACAGGTGCTTTACTATGTGATGACAACAGGTTCCGGACAACAGACGCTCGGAGAGGAATACTGTGATATCACTCAGGTTGGAGGACCTTATGGACTTCCTCCTACTCCTGCAAGGCGTGCCCTTTTCATTGTATACCAGACAGCTGTTCCATATATTGCGGAACGAATAAGTTCTAGAATTGCTTCCCGAGGAATCGCACTTGCCGATTCACAATCTGCTGGCATCTATGGCGACAATGGTACCGTTAGGAGTAGTGAATTTCAAACTTCTGATGTGAGTGAATTTCCCTCTTCTACATCAGGGGAATCTCTTACAACTCTGACAAGGTTGAAGGAGAAACTGAGAGGATTGTGGTTGCATATAGTTCAGAGATGGCCTACGATGCTTCCTATGGCTCGTGAGTTGTTGCAACTGGTTCTTCGTGCTAATCTTATGTTCTTCTATTTTGAAGGTCTCTATTATCATATATCAAAGCGTGCTGCTGGAATCCGATATGTATTCATTGGAAAATCATCAAATCAAAGGCCCAGATACCAAATTCTGGGTGTATTTTTATTGATTCAGCTTTGTATAATTGCTGCTGAAGGGCTCCGTCGAAGCAACTTATCTTCGATTGCAAGTTCAGTTCATCAGACATCCTTTGGGACGCACCAGAGATCAGCAGGACGAGGTTTGCCTGTTTTAAATGAAGAGGGTCTTCCAGCATCATCAGACGCAGACAAAGGAAATTGGTTATCTGATGCCACAGCTTCTGAGTCTCAAGCAACACCTAGTGGAGTGAGCAAATGCACGCTCTGCCTGAGTAATCGGCAACATCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATCACGGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGCCGCACCCCCTTAACACACTCAAGTCTGGTGTGCCTGTATCATTCAGACTTCTAG 1254 0.4681 MGWGHLGRTGQSSSGEASTSAEASSTNAQQSLPRRFPLAAQPEIMRAAEKDDQYASFLYEACRDAFRHLFGTRVAVTYQSEVSTLLHELNPCPLSTNLLGQVLYYVMTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVYQTAVPYIAERISSRIASRGIALADSQSAGIYGDNGTVRSSEFQTSDVSEFPSSTSGESLTTLTRLKEKLRGLWLHIVQRWPTMLPMARELLQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKSSNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVHQTSFGTHQRSAGRGLPVLNEEGLPASSDADKGNWLSDATASESQATPSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPLTHSSLVCLYHSDF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1833 417 CDD RING-HC_PEX10 362 401 - -
Mibi08g1833 417 ProSiteProfiles Zinc finger RING-type profile. 363 401 IPR001841 -
Mibi08g1833 417 MobiDBLite consensus disorder prediction 1 35 - -
Mibi08g1833 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 414 IPR013083 -
Mibi08g1833 417 SUPERFAMILY RING/U-box 362 406 - -
Mibi08g1833 417 MobiDBLite consensus disorder prediction 7 34 - -
Mibi08g1833 417 SMART ring_2 363 400 IPR001841 -
Mibi08g1833 417 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 37 415 - -
Mibi08g1833 417 FunFam Peroxisome biogenesis factor 10 337 414 - -
Mibi08g1833 417 Pfam Pex2 / Pex12 amino terminal region 51 299 IPR006845 -
Mibi08g1833 417 Pfam Ring finger domain 362 401 IPR001841 -
Mibi08g1833 417 ProSitePatterns Zinc finger RING-type signature. 378 387 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1833 Mibi-ChrMibi08 35150024 35153663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1833 354 413 C3H Transcription Factor Family AT4G27470 38.571 1.23e-10 59.7