LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi08g1821	ATGAGTGACAGTAATCCTCCAAACCCACCAGATTCACCAGAGAGCGATTTCACAAACCATAATCCTTTTGAAGAGTTCTCTGAATTCTTCAACTTCGAGGATGATGATGAGGAACCTGATCATTCCACGATGGCTTCTGAACAAGTCCCGAATCAGCAGGTGTATCAACAAAGCAGTGAAGAAGTAAGTGGATTTGGAGGAAGCACAAGCAACCCTTTCGAGGGGTCTTCTAGTAGTAGAGACATTGGGAGTAGTGGGGAAAGGGAAGTGAAAGACAGAGTAGCATTCAAAACAATGACAGAGGTAGAGATACTGGACGATGGATACAGGTGGAGAAAGTACGGGAAGAAGATGGTTAAGAACAGCCCCAACCCCAGGAATTACTATAGGTGTTCAGTGGAGGGATGCCAGGTGAAAAAGAGAGTTGAGAGAGATAAGGATGATCCAAGGTATGTTATTACGACCTACGAAGGCGTCCACACCCATCCAAGCTTAACGTAG	501	0.4531	MSDSNPPNPPDSPESDFTNHNPFEEFSEFFNFEDDDEEPDHSTMASEQVPNQQVYQQSSEEVSGFGGSTSNPFEGSSSSRDIGSSGEREVKDRVAFKTMTEVEILDDGYRWRKYGKKMVKNSPNPRNYYRCSVEGCQVKKRVERDKDDPRYVITTYEGVHTHPSLT	166

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi08g1821	166	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	27	163	IPR044810	GO:0003700
	Mibi08g1821	166	ProSiteProfiles	WRKY domain profile.	100	165	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi08g1821	166	Pfam	WRKY DNA -binding domain	106	163	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mibi08g1821	166	SUPERFAMILY	WRKY DNA-binding domain	97	163	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi08g1821	166	Gene3D	WRKY domain	92	158	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mibi08g1821	166	MobiDBLite	consensus disorder prediction	1	91	-	-
	Mibi08g1821	166	MobiDBLite	consensus disorder prediction	44	83	-	-
	Mibi08g1821	166	FunFam	WRKY transcription factor 57	91	165	-	-
	Mibi08g1821	166	SMART	WRKY_cls	105	164	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi08g1821	Mibi-ChrMibi08	35041848	35042847	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi08g1821	93	165	WRKY Transcription Factor Family	AT5G26170	78.082	3.71e-41	134

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mibi08g1821		WRKY	2.9e-25	CL0274