Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1808 ATGCGTTTGTTGATCCGAACTTTTACAATCATGGCTGGTGTGGTACCGGAAGGGTCTCAATTCGACGCTCGTCAATTTGATGCTAAGATGAATGAATTGCTTGGAACTGAAGGGCAGGACTTCTTTACTAGTTATGATGAAGTTTATGAAAGCTTTGATGCTATGGGATTGCAGGAGAACCTGCTGAGAGGCATTTATGCTTATGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGGGGGATTGTTCCTTTTTGCAAGGGTCTTGATGTGATTCAGCAAGCACAATCCGGAACTGGAAAAACTGCTACCTTTTGTTCTGGAATTTTGCAGCAGCTTGATTATAGCTTAGTTGAATGCCAAGCACTCGTTCTTGCTCCGACTCGTGAACTTGCACAACAAATTGAGAAGGTCATGCGAGCACTGGGTGACTATTTGGGTGTCAAGGTTCATGCTTGTGTGGGTGGCACCAGTGTCCGAGAAGACCAACGTATCCTCTCAAGTGGGGTACATGTTGTTGTTGGTACCCCTGGTCGTGTATTTGACATGCTTCGGAGACAATCTCTCCGCCCTGATTACATTAAAATGTTTGTGTTGGATGAGGCAGATGAGATGCTTTCTCGGGGTTTCAAGGATCAGATCTATGATATTTTCCAGCTGCTGCCACCAAAAATTCAGGTTGGGGTTTTCTCTGCTACCATGCCTCCGGAGGCTCTTGAGATTACAAGGAAATTCATGAATAAACCTGTGAGGATCTTGGTGAAGCGTGATGAGCTTACCTTGGAAGGTATCAAACAATTTTACGTCAATGTTGAGAAGGAGGAATGGAAGCTGGAGACTCTTTGTGATCTTTACGAGACATTGGCAATTACCCAGAGTGTCATCTTTGTGAACACCAGGCGCAAGGTGGACTGGCTTACAGATAAGATGCGCAGCCGTGATCACACCGTTTCTGCTACCCATGGAGATATGGACCAAAACACAAGGGATATCATCATGAGAGAATTCCGCTCTGGGTCTTCCCGTGTTTTAATCACCACAGATTTATTGGCCCGTGGTATTGATGTCCAGCAAGTTTCCCTTGTGATTAATTACGATCTTCCAACCCAGCCAGAGAATTATCTGCATCGAATTGGTCGTAGTGGTCGGTTTGGGAGGAAGGGTGTTGCGATTAATTTTGTGACCAAGGATGATGATAGGATGCTGTTTGACATTCAAAAGTTTTATAATGTGGTGATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTTTGA 1272 0.4473 MRLLIRTFTIMAGVVPEGSQFDARQFDAKMNELLGTEGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDRMLFDIQKFYNVVIEELPANVADLL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1808 423 Gene3D - 259 423 IPR027417 -
Mibi08g1808 423 SMART ultradead3 69 266 IPR014001 -
Mibi08g1808 423 Pfam DEAD/DEAH box helicase 75 236 IPR011545 GO:0003676|GO:0005524
Mibi08g1808 423 CDD SF2_C_DEAD 263 393 - -
Mibi08g1808 423 FunFam Eukaryotic initiation factor 4A-III 258 423 - -
Mibi08g1808 423 CDD DEADc_EIF4A 54 252 - -
Mibi08g1808 423 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 50 78 IPR014014 GO:0003724
Mibi08g1808 423 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 81 251 IPR014001 -
Mibi08g1808 423 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
Mibi08g1808 423 FunFam Eukaryotic initiation factor 4A-II 38 257 - -
Mibi08g1808 423 Pfam Helicase conserved C-terminal domain 276 384 IPR001650 -
Mibi08g1808 423 Gene3D - 40 258 IPR027417 -
Mibi08g1808 423 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 197 205 IPR000629 -
Mibi08g1808 423 PANTHER RNA HELICASE 46 407 - -
Mibi08g1808 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 404 IPR027417 -
Mibi08g1808 423 SMART helicmild6 303 384 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1808 Mibi-ChrMibi08 34917596 34920226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1808 11 423 Eukaryotic Initiation Factors Gene Family AT1G72730 89.130 0.0 770