Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1800 ATGAGTGGTAGTTTAATTTGGAGAAGACAGATGATGAAAGGTTTGGTGATGGATGAGAATATGTCAAATTTGACATCTGCATCTAGTGAAATAAGCGCTTCTTCTGCCACCAGAAATGATACTCCTGTCTCTCTCTATCCTCACCAGTTCTCCTCCACTTCAACAAATCAAGAACCACTACATCCCAAAAAGAAGAGAAACCTCCCAGGCAATCCAGACCCAGAGGCCGAAGTAATAGCCTTGTCTCCCAAGACCCTATTGGCGACCAACCGATTCTTCTGTGAAGTATGTAACAAAGGGTTTCAAAGAGACCAAAATCTGCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAGCTAAAGCAAAGAAACAACAAAGAAGTGATTAAGAAGAAGGTGTATGTGTGCCCGGAGGTGACGTGTGTTCACCATGACCCTTCAAGGGCACTCGGTGACCTCACCGGCATTAAGAAGCACTTTTGCAGGAAGCACGGCGAGAAAAAATGGAAGTGTGACAAATGCTCCAAACGTTACGCTGTTCAGTCTGACTGGAAAGCTCACTCTAAAATTTGTGGCACTAAGGAGTACAAATGTGATTGTGGAACCATCTTCTCTAGGAGGGACAGTTTCATAACACACAGGGCCTTCTGTGATGCTTTAGCACAGGAGAGTGCAAGAGCAATCACAGCAGTGAACATCCCTCTTCTCCATAGCCATCCCCTCCAAGCTCCTCCACCACCACCACCATTATTACTCTCCAAAAAAGAACCTGATTTTATTCCACCATGGCTGGCAGATCATCAAGCTCCAACAACTACAAACACACTCATCAGGCCTCTAATCTCCTCCTCCACCTCACACATAGACCAGCCCTTAAACTTAATCCACCAAAACCCTAATAATAACCCAAATATCAATACACCTTCTTCCCTCCCTCGTTTCCAATCCCCATCATCAGCCTCCCCTTACATGTCAGCCACTGCTTTGTTGCAGAAAGCATCACAAATAGGTCACATGCCTCAATCTGATCAACAATGTACCACCATGCCTAATTCATCCTCTTCTTTACCTGTTTCTGGTTTTGGTATGCCTTCACGTGACCATATAGGGTTGCCTCATCAATATGCCTTGGCTTCTTATGCGAATAAAGCTGCTCAAGATGGCTTTGTCTCTGATCATTACTTAGAAGATGCTCCTACTACCACTACTCCACCTAATACTACTTCTCTTTTTCATGACATGATGGCTACTAATAATAATAATACTGCTTCTTCTGCTAATAATGCCTTTGAGAGGTCTTCCTTTGAAGATGCTTTGAGGGGAATGTTGAATCCAACAAGAGATGCCACTGCTAGTGATGAAATGACCCGAGATTTTTTGGGTCTTAAGGCATTTTCTCAGAAAGATTTTTTCAACATATCGGGGCTTGATCATTTGGGTTCTTCTTCGTATGGTGATAAGCAAGGTCGCAACCAAACACCTTGGCAAGGTTAA 1494 0.4371 MSGSLIWRRQMMKGLVMDENMSNLTSASSEISASSATRNDTPVSLYPHQFSSTSTNQEPLHPKKKRNLPGNPDPEAEVIALSPKTLLATNRFFCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKKVYVCPEVTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAQESARAITAVNIPLLHSHPLQAPPPPPPLLLSKKEPDFIPPWLADHQAPTTTNTLIRPLISSSTSHIDQPLNLIHQNPNNNPNINTPSSLPRFQSPSSASPYMSATALLQKASQIGHMPQSDQQCTTMPNSSSSLPVSGFGMPSRDHIGLPHQYALASYANKAAQDGFVSDHYLEDAPTTTTPPNTTSLFHDMMATNNNNTASSANNAFERSSFEDALRGMLNPTRDATASDEMTRDFLGLKAFSQKDFFNISGLDHLGSSSYGDKQGRNQTPWQG 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1800 497 SUPERFAMILY beta-beta-alpha zinc fingers 91 189 IPR036236 -
Mibi08g1800 497 FunFam protein indeterminate-domain 5, chloroplastic-like 147 226 - -
Mibi08g1800 497 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Mibi08g1800 497 Gene3D Classic Zinc Finger 147 227 - -
Mibi08g1800 497 MobiDBLite consensus disorder prediction 478 497 - -
Mibi08g1800 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Mibi08g1800 497 SMART c2h2final6 169 189 IPR013087 -
Mibi08g1800 497 SMART c2h2final6 92 114 IPR013087 -
Mibi08g1800 497 SMART c2h2final6 134 164 IPR013087 -
Mibi08g1800 497 Gene3D Classic Zinc Finger 71 142 - -
Mibi08g1800 497 MobiDBLite consensus disorder prediction 28 76 - -
Mibi08g1800 497 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 468 IPR031140 -
Mibi08g1800 497 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Mibi08g1800 497 MobiDBLite consensus disorder prediction 28 58 - -
Mibi08g1800 497 MobiDBLite consensus disorder prediction 297 321 - -
Mibi08g1800 497 FunFam protein indeterminate-domain 12-like 71 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1800 Mibi-ChrMibi08 34796312 34798603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1800 17 390 IDZ Gene Family AT1G55110 52.174 1.30e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi08g1800 zf-C2H2_jaz 3.1e-05 CL0361