Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1769 ATGGTGATCGAAGAACTAGCTACTTTTCACACTTCACAGTCCAACTTCCCTCATAATTCAACCATCGCACTACCCATCGATTGTTTAGCCATCAACTTAAACGTCAATGACGGTGACTTCGATTCCCCACTTTCTCCCATTGATTTAGATTCCCTCTGCGAAGATCTCGACGCTTCTTTCGATTCCTTCTCCAGCGACCATTTCCGAATCTTCGAGTTCAAGATCCGCAAATGCGCTCGCTCCCGCTCACACGACTGGACCCAATGTCCGTACGCCCATCCCGGCGAGAAGGCTCGCCGCAGAGATCCCCGGAGATTTAACTACTCCGGCACCTCATGCCCCGATTTTCGCAAAGGTAACTGCAACAAAGGCGACACGTGCGAGTTCGCTCATGGAGTATTTGAGTGTTGGCTTCATCCCTCTCGTTACAGAACTCAACTGTGTAAAGATGGCGCAAATTGTCGCCGGAGAATTTGCTTCTTCGCTCACACGCCTGAACAATTGCGATTCCTCGCTAACGGATCGCCGATCTGTGATGCCTCCTTCGTTTCATCGCCTACTTCGGTACTCGAGCCGTCGCCGATTTCTTCGTTGCCGGAGTCGCCGCCGATTTCGCCGGGAAATCGGCGATCCGGTTTGTTTAGTGTGTCCGGTTTGTTCGGTTCGGTTCGCGGTTCGAATCTTCGACCCGGGTTTTTGAGCCTTCCTACGACTCCGACTCGAAGGGTACCGAAATTTGGCCTTGACTTACGTGATCAAAGTTACCAGGAAGAACCTGCGATGGAAAGGGTAGAATCGGGAAGAGAAATTAGAGCAATAATGTATGCTAAGCTCTGTAAGGAGAATTCATTTGGGTGA 858 0.5058 MVIEELATFHTSQSNFPHNSTIALPIDCLAINLNVNDGDFDSPLSPIDLDSLCEDLDASFDSFSSDHFRIFEFKIRKCARSRSHDWTQCPYAHPGEKARRRDPRRFNYSGTSCPDFRKGNCNKGDTCEFAHGVFECWLHPSRYRTQLCKDGANCRRRICFFAHTPEQLRFLANGSPICDASFVSSPTSVLEPSPISSLPESPPISPGNRRSGLFSVSGLFGSVRGSNLRPGFLSLPTTPTRRVPKFGLDLRDQSYQEEPAMERVESGREIRAIMYAKLCKENSFG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1769 285 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Mibi08g1769 285 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 113 132 IPR000571 GO:0046872
Mibi08g1769 285 PANTHER UNKEMPT FAMILY MEMBER 53 285 IPR045234 -
Mibi08g1769 285 Gene3D - 108 170 - -
Mibi08g1769 285 SUPERFAMILY CCCH zinc finger 106 136 IPR036855 GO:0046872
Mibi08g1769 285 SMART c3hfinal6 142 165 IPR000571 GO:0046872
Mibi08g1769 285 SMART c3hfinal6 107 133 IPR000571 GO:0046872
Mibi08g1769 285 FunFam Zinc finger CCCH domain-containing protein 66 65 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1769 Mibi-ChrMibi08 34537359 34538216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1769 63 218 C2H2 Transcription Factor Family AT5G12850 53.846 3.09e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi08g1769 zf-CCCH 1.2e-05 CL0537