Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1767 ATGGAGGAATATAATAATAACAATCTGAGTGAAAACAATGGAGTGAGGGCTAATTTTTTGTACTCTTCGGCTGGTATTGGGTATGGAAGAGGTGGTGGTGGTGGTTCTAGCGTTGCTCATAATCACTTACCTATCAACAATACTTTCCATCTTCACTCTTCTGCTTCTGATTGCTTCCCTCAATCTGATCATCATCATCATCAGCCTCATCCCACTGTTAAAACTGAGGCCAATACTTCCCATCATGCTCAGATTTTTCAGTATCCTCTTCTCAGAGGAAATCTTCACATGATTCATCCCCAAGCTGGAGGAGGTGGTGGTTCAGATAGTCCCAACGAGGTTGATGCTATTAAGGCTAAAATCATTGCTCATCCTCAGTATTCCAACCTCCTTCAAGCTTACATGGATTGCCAAAAGGTGGGTGCTCCGCCGGAAGTGGTGGCACGTCTGGCTGCTGCTCGGCAGGAGTTTGAGGCACGGCAGCGATCTTCATCTTCTTCAAGGGAAGGTTCCAAGGATCCTGAACTTGACCAATTCATGGAAGCTTATTATGATATGCTTGTGAAGTATAGAGAGGAATTGACAAGGCCTATCCAAGAAGCCATGGATTTCATGCGAAGGATTGAAACCCAACTCAATATGCTGTGCAATGGATCCGTCCGTATCTTCTCTGATGATAAGTGTGAAGGGGTTGGTTCGTCTGAAGAGGATCAAGACAATAGTGGTGGAGAAACAGAATTACCAGAGATTGATCCCAGAGCTGAAGACCGTGAGCTTAAGAACCACTTACTGAGGAAGTATAGCGGTTACTTAAGCAGTCTCAAGCAAGAACTGTCCAAGAAAAAGAAGAAAGGAAAACTTCCCAAAGATGCCAGGCAAAAGCTCCTCAGCTGGTGGGAATTACACTACAAATGGCCCTATCCTTCGGAGTCAGAGAAGGTGGCTTTGGCTGAATCAACAGGATTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTCATGGTGATGGATGGGCTTCATCCACAGAACGCATCTCTCTATATGGATGGTCACTACATGCCCGATGGTCACTACCGTCTAGGCCCTTGA 1131 0.4509 MEEYNNNNLSENNGVRANFLYSSAGIGYGRGGGGGSSVAHNHLPINNTFHLHSSASDCFPQSDHHHHQPHPTVKTEANTSHHAQIFQYPLLRGNLHMIHPQAGGGGGSDSPNEVDAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVVARLAAARQEFEARQRSSSSSREGSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGSVRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNASLYMDGHYMPDGHYRLGP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1767 376 CDD homeodomain 290 342 IPR001356 GO:0003677
Mibi08g1767 376 Pfam KNOX2 domain 171 216 IPR005541 GO:0003677|GO:0005634
Mibi08g1767 376 SMART KNOX1_2 115 159 IPR005540 GO:0003677|GO:0005634
Mibi08g1767 376 ProSiteProfiles 'Homeobox' domain profile. 278 341 IPR001356 GO:0003677
Mibi08g1767 376 SMART ELK_2 258 279 IPR005539 GO:0003677
Mibi08g1767 376 ProSiteProfiles ELK domain profile. 258 278 IPR005539 GO:0003677
Mibi08g1767 376 SMART KNOX2_2 166 217 IPR005541 GO:0003677|GO:0005634
Mibi08g1767 376 FunFam Homeobox protein knotted-1-like 2 283 345 - -
Mibi08g1767 376 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 348 - -
Mibi08g1767 376 MobiDBLite consensus disorder prediction 227 255 - -
Mibi08g1767 376 ProSitePatterns 'Homeobox' domain signature. 316 339 IPR017970 GO:0000981|GO:0006355
Mibi08g1767 376 Gene3D - 283 345 - -
Mibi08g1767 376 MobiDBLite consensus disorder prediction 57 76 - -
Mibi08g1767 376 Pfam ELK domain 258 279 IPR005539 GO:0003677
Mibi08g1767 376 SUPERFAMILY Homeodomain-like 279 353 IPR009057 -
Mibi08g1767 376 SMART HOX_1 280 345 IPR001356 GO:0003677
Mibi08g1767 376 Pfam KNOX1 domain 116 158 IPR005540 GO:0003677|GO:0005634
Mibi08g1767 376 Pfam Homeobox KN domain 298 337 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1767 Mibi-ChrMibi08 34470221 34473058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1767 51 376 Homeobox Transcription Factor Family AT4G08150 70.746 2.90e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mibi08g1767 KNOX2 2.8e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1767 08 34470221 34473058 Mibi08g1767 08 34470221 34473058 ECH