Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1752 ATGGATTCTGATCAAGCGAAGCTGTTTGTGGGTGGCATTTCACGGGACACCACCGAAGATATTTTGAAAGACCACTTCGCCAAGTATGGCTCTGTTTTGGGTTCCACAATTTCGGTGGAACGCAACACCAAAATTCCCAGAGGCTTTGGCTTCGTAAGGTTCTCTGATGTTTCTGCGGCTGATAGAGCCCTTCAAGATACGCATGTCATACTCGGAAGAACGGTTGAAGTGAAGAAAGCAATACCTAGAAGTGAATATCAAAATCAAAACCCACCCCAGAGTAGATGGACGAGTAACTGTGGTAATTATGACAGTAGCAGCGACAAATTTAGCACCAAAAAGGTTTTTGTAGGAGGTTTATCAGCTGGTATATCCGAGGACGAATTTAGGAAATACTTCGAGAGGTTTGGTAGAATTACGGATGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCTAGGGGATTTGGTTTCATTACTTTTGATTCAGAAGAATCTGTTGAAAGTGTGATGATGAATAGCTTTCATGATTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTGCCAAAAGACGGGAATAATGGTTATGATGGTGTTAATAGAATGAGATATAAGAATGGAAGAGTAGCCCCTAAAAGTTACCCACATAGGTACATTCCCCCTGCGTTTACGCCTCTACCTTACGGCGGTGATGGATTATATTGTTATGGATCTAACATGTATGGTTGTTGGATCCCTGTGGGAGGGTATGGTTTTAATGGTTCTGCAGTTCCATTTGATGCTCCTAGGAATTTCTGGTATGGTCCTCCAGTAGCAACTGCTCAGACTTTCCAGGTGCCTTATGCTCCAACCCACGCGTATGGGAGTTTTAGGGGTGTACTCGGTACTGAAGCTAGGGGCTACTATGGCATTATGGGATCCCCAGCAAATTTTAAATTCAATCAGGTTTTCGGTGCCAATGGATTTCTACCTGCTGATGTTACGGCATCATCTCCTAAGATTGAAGAGTTGAATCAGGAAGTGGAGTCTCTAAGTTTGAAAGAAAGCAAAGCCGAACCTTCTAGTTGA 1071 0.4379 MDSDQAKLFVGGISRDTTEDILKDHFAKYGSVLGSTISVERNTKIPRGFGFVRFSDVSAADRALQDTHVILGRTVEVKKAIPRSEYQNQNPPQSRWTSNCGNYDSSSDKFSTKKVFVGGLSAGISEDEFRKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVESVMMNSFHDLNGRQVEVKRAVPKDGNNGYDGVNRMRYKNGRVAPKSYPHRYIPPAFTPLPYGGDGLYCYGSNMYGCWIPVGGYGFNGSAVPFDAPRNFWYGPPVATAQTFQVPYAPTHAYGSFRGVLGTEARGYYGIMGSPANFKFNQVFGANGFLPADVTASSPKIEELNQEVESLSLKESKAEPSS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1752 356 SUPERFAMILY RNA-binding domain, RBD 87 201 IPR035979 GO:0003676
Mibi08g1752 356 MobiDBLite consensus disorder prediction 83 101 - -
Mibi08g1752 356 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 108 192 - -
Mibi08g1752 356 Gene3D - 110 192 IPR012677 -
Mibi08g1752 356 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 272 - -
Mibi08g1752 356 Gene3D - 1 91 IPR012677 -
Mibi08g1752 356 MobiDBLite consensus disorder prediction 82 101 - -
Mibi08g1752 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Mibi08g1752 356 SMART rrm1_1 7 78 IPR000504 GO:0003723
Mibi08g1752 356 SMART rrm1_1 114 186 IPR000504 GO:0003723
Mibi08g1752 356 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Mibi08g1752 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Mibi08g1752 356 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 173 IPR000504 GO:0003723
Mibi08g1752 356 SUPERFAMILY RNA-binding domain, RBD 3 106 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1752 Mibi-ChrMibi08 34222763 34224145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1752 8 259 Eukaryotic Initiation Factors Gene Family AT4G34110 26.070 5.31e-16 77.4