Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1740 ATGGACGACGCATATGCCAGATCTATTCCTGAGGTACTCGAATTCTTCCAAGTGGACCCAACAAAAGGTCTTTCTGATAGCCAGGTGGCACAACATGCTAGACTCTATGGTACAAACGGGGCTCCTTTTTGGAAATTGGTGTTGAAACAATTTGATGATTTGCTTGTGAAGATATTAATAGCAGCCGCACTTATTTCTTTTATTCTGGCTTTAATCAATGGAGAAACAGGCTTAATGGCATTTCTGGAGCCTTCTGTTATTCTAATGATATTGGCTGCAAATGCGGCAGTTGGGGTGATTACAGAAACAAATGCTGAAAAAGCTCTTGAGGAGCTACGGGCCTATCAAGCTGATGTTGCAACTGTACTTCGAAATGGTTGTTTTTCCATACTCCCGGCTACTGAAATTGTTCCTGGAGATATTGTGGAAATTTCTGTTGGGTGCAAAATTCCTGCTGATATGAGGATGATTGAGATTCTGAGTAATGGAGTACGTGTTGATCAGGCTATTCTTACAGGTGAGAGCAATTCTGTGGCTAAAGAGCTCGAAATTACCACAGCAACAAAGGCTGTATATCAAGACAAGACAAATATATTGTTTTCGGGAACAGTTGTGGTTGCTGGTAGGGCAAGAGCTATTGTGGTGGGAGTTGGTCATAATACTGCCATGGGCAGCATACGAGATTCAATGTTGCAAACAGAAGATGAGGTGACTCCATTGAAGAAGAAACTGGACGAGTTTGGTACCTTTTTGGCCAAGGTTATTGCAGGGATTTGCATACTGGTGTGGATTGTAAATATTGGACACTTTCGTGACCCTTCTCATGGGGGTTTCTTGCAGGGTGCCATTCATTATTTTAAGATTGCTGTTGCTCTGGCAGTTGCAGCAATTCCGGAAGGGCTCCCTGCTGTAGTTACAACTTGTTTGGCCCTTGGAACAAAACGGATGGCTAGGCTGAATGCTATTGTTCGGTCTTTACCTTCCGTGGAGACACTGGGCTGCACTACTGTAATTTGCAGTGACAAAACGGGAACTTTGACAACTAATATGATGTCTGTGACAAAGATATGTGTGGTTCACTCTGCAAAACACAGTCCTATTGTTACTGAATACAATGTTAGCGGAACAACATATGCACCTGAAGGCACAATCTTTGACAGTTCAGGAATACAGCTTGATGTTCCTGCTCGATTGCCGTGTCTTCTTCACACAGCAATGTGTTCTGCCCTTTGCAATGAGTCCACCCTGCAGTATAACCATGATAAAGGAAAGTATGAAAAAATTGGAGAGTCAACTGAAGTAGCACTTCGTGTTGGTCTCCCTGGTTTTGATTCTATGCCATCAGCCTTGAACATGTTGAGCAAGCATGAGCGGGCATCTTACTGTAATCATTATTGGGAGGAACAATTTAGAAAGATAGATCTTTTGGATTTTTCTCGAGATCGGAAAATGATGAGTGTCCTTTGCAACCGAAATCAGCATCATGTGTTGTTCTCCAAGGGTGCTCCAGAGAGTATCATGTCTAGGTGTACAACTATCATGTGCAATGACAATGGTTCTGTTGCGCCTCTTACTGCTGATGTTCGGGCTGAGCTGGAGTCAAGGTTCCACAGTTTTGCAGGAAAAGAAACATTGAGATGCCTAGCTTTAGCATTAAAATGGATGCCCTTGAGTCAACAACGTCTTTCCTATGATGATGAGAAAGATCTTACATTTATTGGGTTGGTTGGAATGCATGATCCACCAAGAGATGAAGTAAGAAATGCAATGCTTTCTTGCATGACCGCTGGCATTCGTGTTATAGTTGTTACTGGGGATAACAAGTCTACTGCTGAGTCACTTTGCCGCAAGATAGGGGCTTTTGACCACGTCTTGGAATTTAATGAACATTCCTATACTGCTTCTGAATTTGAAGAACTTCCAGCTATGCAGCAAACTGTTGCTTTGCAACGTATGGCTCTTTTTGCCAGGGTTGAGCCATCTCATAAAAGGTTGCTGGTTGAAGCATTGCAGCACCAGAATGAAGTGGTTGCTATGACTGGTGACGGTGTCAATGATGCACCTGCACTGAAGAAGGCAGACATAGGAATTGCTATGGGCTCAGGTACAGCTGTTGCCAAGAGCGCTTCAGATATGGTACTGGCTGATGATAACTTCGCTACAATTGTTGCGGCTGTGGCAGAGGGAAGGGCCATATACAGTAATACGAGGCAGTTCATTAGATATATGATCTCTTCTAATATTGGTGAAGTAGTCTGTATATTTGTGGCAGCGGTGCTTGGAATTCCTGACACCCTTGCCCCAGTCCAGCTGCTTTGGGTCAATTTGGTTACTGACGGATTGCCTGCCACTGCTATTGGCTTTAATAAGCCAGATTCTGATGTAATGAAGGCCAAACCTCGTAAGGTGAATGAAGCAGTGGTTACAGGGTGGCTGTTCTTCCGTTATCTAGTAATTGGAGCTTATGTCGGTCTCGCTACTATTGCTGGTTTTATTTGGTGGTTTGTTTACTCTGACAGTGGCCCAAAACTACCATATACTGAATTGATGAATTTTGACAGTTGCTCAACAAGGCAGACAACCTACCCATGCAGTATATTTGATGATCGACACCCATCTACTGTAGCAATGACTGTGCTTGTTGTTGTTGAGATGTTCAATGCTTTGAACAATCTTAGCGAGAATCAATCTCTGCTGGTTATCCCTCCATGGAGTAACTTATGGCTTGTTGGTTCAATAATTATTACTTTGCTTCTTCACATGCTTATTTTGTATGTGCATCCTCTCTCAGTTCTTTTCTCTGTGACACCATTATCCTGGGATGACTGGTTGATTGTCCTGTATCTTTCATTACCTGTTATATTCATTGATGAGGTCTTAAAGTTATTCTCCAGGCGTCCCATTGGTCTGAGGTTCAGATTATGGTTCAGGAGGCCCGATTTACTGCCAAAAAGAGAATTGCGTGATAAGTAA 2973 0.4295 MDDAYARSIPEVLEFFQVDPTKGLSDSQVAQHARLYGTNGAPFWKLVLKQFDDLLVKILIAAALISFILALINGETGLMAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVATVLRNGCFSILPATEIVPGDIVEISVGCKIPADMRMIEILSNGVRVDQAILTGESNSVAKELEITTATKAVYQDKTNILFSGTVVVAGRARAIVVGVGHNTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICILVWIVNIGHFRDPSHGGFLQGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVTKICVVHSAKHSPIVTEYNVSGTTYAPEGTIFDSSGIQLDVPARLPCLLHTAMCSALCNESTLQYNHDKGKYEKIGESTEVALRVGLPGFDSMPSALNMLSKHERASYCNHYWEEQFRKIDLLDFSRDRKMMSVLCNRNQHHVLFSKGAPESIMSRCTTIMCNDNGSVAPLTADVRAELESRFHSFAGKETLRCLALALKWMPLSQQRLSYDDEKDLTFIGLVGMHDPPRDEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHVLEFNEHSYTASEFEELPAMQQTVALQRMALFARVEPSHKRLLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYSNTRQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKPDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFVYSDSGPKLPYTELMNFDSCSTRQTTYPCSIFDDRHPSTVAMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVGSIIITLLLHMLILYVHPLSVLFSVTPLSWDDWLIVLYLSLPVIFIDEVLKLFSRRPIGLRFRLWFRRPDLLPKRELRDK 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1740 990 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 966 IPR023298 -
Mibi08g1740 990 Pfam E1-E2 ATPase 116 318 - -
Mibi08g1740 990 PRINTS P-type cation-transporting ATPase superfamily signature 167 181 - -
Mibi08g1740 990 PRINTS P-type cation-transporting ATPase superfamily signature 680 699 - -
Mibi08g1740 990 PRINTS P-type cation-transporting ATPase superfamily signature 574 585 - -
Mibi08g1740 990 PRINTS P-type cation-transporting ATPase superfamily signature 703 715 - -
Mibi08g1740 990 PRINTS P-type cation-transporting ATPase superfamily signature 596 606 - -
Mibi08g1740 990 PRINTS P-type cation-transporting ATPase superfamily signature 339 353 - -
Mibi08g1740 990 SMART Cation_ATPase_N_a_2 3 71 IPR004014 -
Mibi08g1740 990 ProSitePatterns E1-E2 ATPases phosphorylation site. 341 347 IPR018303 -
Mibi08g1740 990 Pfam Cation transport ATPase (P-type) 409 513 - -
Mibi08g1740 990 SUPERFAMILY HAD-like 567 728 IPR036412 -
Mibi08g1740 990 FunFam Calcium-transporting ATPase, putative 203 335 - -
Mibi08g1740 990 SUPERFAMILY Calcium ATPase, transduction domain A 118 229 IPR008250 -
Mibi08g1740 990 PRINTS H+-transporting ATPase (proton pump) signature 652 668 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi08g1740 990 PRINTS H+-transporting ATPase (proton pump) signature 711 736 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi08g1740 990 PRINTS H+-transporting ATPase (proton pump) signature 680 696 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi08g1740 990 CDD P-type_ATPase_SERCA 5 965 - -
Mibi08g1740 990 FunFam Sodium/potassium-transporting ATPase subunit alpha 575 719 - -
Mibi08g1740 990 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 650 765 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi08g1740 990 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 86 365 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi08g1740 990 FunFam Calcium-transporting ATPase 349 581 - -
Mibi08g1740 990 SFLD p-type atpase 320 732 IPR044492 -
Mibi08g1740 990 Pfam Cation transporter/ATPase, N-terminus 6 66 IPR004014 -
Mibi08g1740 990 Gene3D - 336 724 IPR023214 -
Mibi08g1740 990 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 346 578 IPR023299 GO:0000166
Mibi08g1740 990 Gene3D - 49 965 - -
Mibi08g1740 990 Pfam haloacid dehalogenase-like hydrolase 571 694 - -
Mibi08g1740 990 TIGRFAM ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type 47 835 IPR005782 GO:0005388|GO:0006816|GO:0016020
Mibi08g1740 990 SFLD C1.7: P-type atpase like 320 732 - -
Mibi08g1740 990 Gene3D - 22 231 - -
Mibi08g1740 990 Pfam Cation transporting ATPase, C-terminus 764 963 IPR006068 -
Mibi08g1740 990 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 675 969 - -
Mibi08g1740 990 Gene3D - 349 581 IPR023299 GO:0000166
Mibi08g1740 990 FunFam Calcium-transporting ATPase 106 231 - -
Mibi08g1740 990 PANTHER CALCIUM-TRANSPORTING ATPASE 7 966 - -
Mibi08g1740 990 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1740 Mibi-ChrMibi08 34090465 34109805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1740 1 990 Primary Pumps ATPases(2) AT1G10130 81.518 0.0 1669