LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi08g1726	ATGGAGACTTATCTGAATGAGAATTTTGGGGATGTGAAACCTAAGAACTCATCGGACGAAGCGCTTCAACGGTGGAGAAAACTTTGTTGGCTCGTGAAAAACCGTAAGAGAAGATTTCGCTTCACTGCCAATCTCTCCAAACGATTCGAAGCCGAAGCTATAAGACGATCTAATCAGGAGAAGTTCCGAGTTGCAGTCTTGGTTTCACAAGCTGCACTTCAGTTTATCCATGGTCTAAAATTGTCAAGTGAATACACTCCACCAGAAGAAGTTAGAGCTGCAGGTTTTGAAATTTGTGCAGATGAGTTGGGATCAGTTGTTGATGGTCGTGATGTCAAGAAGCTGAAAATTCATGGAGGGATTGAGGGCATTTCAAACAAGCTCGCTACCTCTTTAGATGAGGGGTTATTGACATCTGAGCAATTTCTAAATCAGAGGAAAGAGATTTATGGAATCAATAGATTCACTGAAAGCCCAGCCCGGGGGTTTTGGATATTTGTTTGGGAAGCCCTTCAAGATACAACCCTTTTGATACTTGCTGCTTGTGCCTTAGTCTCTTTGTTGGTTGGCATAATAATGGAAGGATGGCCTAAGGGCGCACATGATGGAATTGGTATAGTTGCCAGCATATTGCTTGTTGTGTTTGTCACTGCCACAAGTGATTATAGACAATCATTACAGTTTAAAGATCTAGATAGGGAGAAGAAAAAGATTAGAGTTCAGGTCACACGAAATGGTTGCAGACAGAAGATTTCAATATATGATTTGCTTCCTGGTGATATTGTCCACCTAAATATTGGAGATCAGGTCCCTGCTGATGGACTCTTTGTGTCAGGTTTCTCCGTGTTGATAAATGAATCAAGTTTGACAGGAGAGAGTGAACCGGTGAATGTCAATGATCGTAACCCTTTTCTTCTTTCTGGAACTAAGGTCCAGGATGGATCTTGCAGGATGCTTGTAACTACTGTTGGAATGAGAACACAGTGGGGAAAGCTAATGGCCACTCTAAGTGAAGGGGGGGATGATGAAACTCCCTTGCAGGTCAAGCTCAATGGTGTAGCTACCATTATTGGGAAAATAGGCCTTTTCTTTGCCGTTGTGACGTTTAGTGTTTTGGTCCAAGGACTATTTAGCCGCAAACTACAAGAAGGGTCCCATTGGATGTGGTCTAGTGGCGATGCTAGGGAAATTTTGGAATTCTTTGCTATTGCGGTTACTATCGTTGTTGTTGCGGTCCCTGAAGGTTTACCCTTAGCTGTAACATTGAGCCTTGCATTTGCTATGAAAAAAATGATGAATGATAAGGCTCTTGTCCGTCATCTGGCTGCTTGTGAAACAATGGGATCTGCGACTACTATTTGTAGCGACAAGACTGGCACTCTCACCACTAACCATATGACTGTTGTGAAAGCTTGCATATGTAGGAAGATAAAGGATGTTGGTATCTGTACAGTCTCTTCTGATTTCTTGACTGATGTTCCTGATTCTGGTCTGAGAATGCTCCTTCAATCAATCTTTAATAACACTGGAGGAGAAGTTGTTAAAGATAAAAATGACAAGATTGAGATTCTGGGAACGCCAACTGAGAGTGCACTATTAGAATTTGGGCTATCCCTTGGTGGTGATTTCCTTCAGGAACGACAAAAGTCAAAAATTGTGAAAGTGGAACCCTTTAACTCTATAAAGAAGTGCATGGGAGTCGTTCTAGAGCTTCCTGATGGTAGCTTCAGAGCACACTGCAAAGGTGCTGCTGAGTTAATTCTTGCTCAATGTGACAAGGTTATAGACTCTAGTGGCAAGGTCATTCCACTTGATGAAGAATCCATCAATGATTTGAACAATACAATCGAAAAGTTTGCCAGTGAAGCTCTGCGAACTATTTGCCTTGCTTACTTGGAGATTAGAAGAGAGTACTCTGTTGAAAGTGCCATCCCTAGTAGTGGGTACACGTGTATAGGAATTGTGGGTATCAAAGATCCAGTTCGCCCAGGTGTTCGAGAGTCCGTTGCCATTTGCAGGGCAGCTGGAATTACTGTAAGAATGGTTACCGGAGATAACATAAATACTGCCAAGGCAATTGCTAGAGAATGTGGAATTCTAACTGATGGTGTAGCAATTGAAGGTCCTGAGTTCCGGGAGAAGAATGACCAGGAATTACATGATCTAATTCCCAAAATTCAGGTAATGGCTCGATCTTCGCCCATGGATAAGCATACCCTAGTGAAACACTTAAGAACCACATTTGAAGAAGTAGTTGCAGTTACTGGTGACGGTACAAATGATGCTCCTGCACTTCATGAAGCAGATATTGGACTTGCAATGGGCATTGCCGGAACTGAGGTAGCGAAAGAAAGTGCAGATGTAATAATACTAGATGATAACTTTTCCACTATCGTGACTGTGGCCAAATGGGGTCGGTCAGTTTACATAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAATATTGTTGCTTTGATTGTCAACTTCTCTTCTGCCTGTTTGACTGGAAATGCTCCTCTCACTGCTGTCCAACTTCTATGGGTCAACATGATCATGGACACTTTAGGAGCACTTGCGCTGGCAACTGAACCTCCTAATGATGACCTGATGAAAAGGTCACCTGTTGGTAGGAAAGGAAACTTTATCAGTAATGTGATGTGGAGGAATATCCTGGGACAGGCCATATATCAGTTTGCTATAATCTGGTTCCTCCAGACCCGAGGGAAAGTAGCTTTTCATCTCGAAGGCCCGGATACTGATTTGACATTGAACACTCTCATTTTCAACTCATTTGTATTTTGTCAGGTTTTCAATGAGATCAGTTCCAGAGAGATGGAGAAGATAAATGTATTTGAGGGTATACTGAAGAACTATGTATTTGTGGCTGTCCTCACTTGCACTGTCCTCTTTCAAATTATAATTGTTGAGTTCTTGAGCACGTTTGCAAACACATCTCCCCTTAGTTGGAAGCAGTGGCTTGGTAGTGTTTTATTTGGATTTCTGGGAATGCCGATTGCGGCAGCTTTAAAGATGATCCCTGTGTGA	3051	0.4228	METYLNENFGDVKPKNSSDEALQRWRKLCWLVKNRKRRFRFTANLSKRFEAEAIRRSNQEKFRVAVLVSQAALQFIHGLKLSSEYTPPEEVRAAGFEICADELGSVVDGRDVKKLKIHGGIEGISNKLATSLDEGLLTSEQFLNQRKEIYGINRFTESPARGFWIFVWEALQDTTLLILAACALVSLLVGIIMEGWPKGAHDGIGIVASILLVVFVTATSDYRQSLQFKDLDREKKKIRVQVTRNGCRQKISIYDLLPGDIVHLNIGDQVPADGLFVSGFSVLINESSLTGESEPVNVNDRNPFLLSGTKVQDGSCRMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLQEGSHWMWSSGDAREILEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICRKIKDVGICTVSSDFLTDVPDSGLRMLLQSIFNNTGGEVVKDKNDKIEILGTPTESALLEFGLSLGGDFLQERQKSKIVKVEPFNSIKKCMGVVLELPDGSFRAHCKGAAELILAQCDKVIDSSGKVIPLDEESINDLNNTIEKFASEALRTICLAYLEIRREYSVESAIPSSGYTCIGIVGIKDPVRPGVRESVAICRAAGITVRMVTGDNINTAKAIARECGILTDGVAIEGPEFREKNDQELHDLIPKIQVMARSSPMDKHTLVKHLRTTFEEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQAIYQFAIIWFLQTRGKVAFHLEGPDTDLTLNTLIFNSFVFCQVFNEISSREMEKINVFEGILKNYVFVAVLTCTVLFQIIIVEFLSTFANTSPLSWKQWLGSVLFGFLGMPIAAALKMIPV	1016

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mibi08g1726	1016	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	460	665	IPR023299	GO:0000166
Mibi08g1726	1016	Gene3D	-	140	337	-	-
Mibi08g1726	1016	FunFam	Calcium-transporting ATPase	17	77	-	-
Mibi08g1726	1016	SFLD	C1.7: P-type atpase like	436	807	-	-
Mibi08g1726	1016	SUPERFAMILY	Calcium ATPase, transduction domain A	239	334	IPR008250	-
Mibi08g1726	1016	FunFam	Calcium-transporting ATPase	649	800	-	-
Mibi08g1726	1016	Pfam	Cation transport ATPase (P-type)	515	594	-	-
Mibi08g1726	1016	Pfam	Ca2+-ATPase N terminal autoinhibitory domain	5	49	IPR024750	GO:0005516
Mibi08g1726	1016	Pfam	Cation transporter/ATPase, N-terminus	119	186	IPR004014	-
Mibi08g1726	1016	PRINTS	H+-transporting ATPase (proton pump) signature	612	630	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Mibi08g1726	1016	PRINTS	H+-transporting ATPase (proton pump) signature	787	812	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Mibi08g1726	1016	PRINTS	H+-transporting ATPase (proton pump) signature	755	771	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Mibi08g1726	1016	PANTHER	CATION TRANSPORTING ATPASE	82	1015	-	-
Mibi08g1726	1016	CDD	P-type_ATPase_Ca_PMCA-like	143	888	-	-
Mibi08g1726	1016	Gene3D	-	169	1014	-	-
Mibi08g1726	1016	Gene3D	-	451	800	IPR023214	-
Mibi08g1726	1016	FunFam	Calcium-transporting ATPase	464	660	-	-
Mibi08g1726	1016	SUPERFAMILY	Calcium ATPase, transmembrane domain M	119	1015	IPR023298	-
Mibi08g1726	1016	FunFam	Calcium-transporting ATPase	772	1016	-	-
Mibi08g1726	1016	SUPERFAMILY	HAD-like	452	860	IPR036412	-
Mibi08g1726	1016	FunFam	Calcium-transporting ATPase	217	337	-	-
Mibi08g1726	1016	Pfam	Cation transporting ATPase, C-terminus	840	1014	IPR006068	-
Mibi08g1726	1016	Pfam	E1-E2 ATPase	237	432	-	-
Mibi08g1726	1016	Gene3D	-	17	77	-	-
Mibi08g1726	1016	ProSitePatterns	E1-E2 ATPases phosphorylation site.	456	462	IPR018303	-
Mibi08g1726	1016	TIGRFAM	ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type	112	1016	IPR006408	GO:0005388\|GO:0005524\|GO:0016020\|GO:0070588
Mibi08g1726	1016	PRINTS	P-type cation-transporting ATPase superfamily signature	653	664	-	-
Mibi08g1726	1016	PRINTS	P-type cation-transporting ATPase superfamily signature	675	685	-	-
Mibi08g1726	1016	PRINTS	P-type cation-transporting ATPase superfamily signature	454	468	-	-
Mibi08g1726	1016	PRINTS	P-type cation-transporting ATPase superfamily signature	755	774	-	-
Mibi08g1726	1016	PRINTS	P-type cation-transporting ATPase superfamily signature	285	299	-	-
Mibi08g1726	1016	PRINTS	P-type cation-transporting ATPase superfamily signature	779	791	-	-
Mibi08g1726	1016	Gene3D	-	464	660	IPR023299	GO:0000166
Mibi08g1726	1016	SFLD	p-type atpase	436	807	IPR044492	-
Mibi08g1726	1016	Pfam	haloacid dehalogenase-like hydrolase	652	769	-	-
Mibi08g1726	1016	TIGRFAM	ATPase_P-type: HAD ATPase, P-type, family IC	390	521	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Mibi08g1726	1016	TIGRFAM	ATPase_P-type: HAD ATPase, P-type, family IC	726	836	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Mibi08g1726	1016	TIGRFAM	ATPase_P-type: HAD ATPase, P-type, family IC	206	377	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
Mibi08g1726	1016	SMART	Cation_ATPase_N_a_2	120	191	IPR004014	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi08g1726	Mibi-ChrMibi08	33995143	34000515	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi08g1726	1	1016	Primary Pumps ATPases	AT1G27770	81.416	0.0	1701