Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1715 ATGGCTCTTGAAGCTCTCAAGTCACCAACAGGCCCTCCTCCCTCGTTCCCTTTCGAATTGGACTCCAATCTTCACTCCTTGGAGTCATGGACTAAGCGCAAGCGTTCCAAGCGTCCCCGCCTCGACCATCCCTCATCATCATGCACCACCGAGGAAGAATATCTCGCTCTCTGCCTCATCATGCTAGCTCGCGGCGGCTCCGCCGTCTCCCCCACCGCCTCCCACCGCCACCACAGCCCCCCCGCCGCCTCTGACTCGGCCCCACCAGATCCCACCGCTACAACCACCACAACAGCCCCTAAGCTCAGTTACAAATGCTCTGTTTGCGACAAGGCTTTCTCTTCTTATCAAGCTCTTGGTGGCCATAAGGCCAGTCACAGAAAACTCACCCCTGGCGCCGAAGATCAATCAACCTCCTCCGCTGTCACCAGTACTTCTGCGAATACTACTACTACTGCGTCCAACGTTGTTGGTGGTAAGTCCCATGAGTGTTCTATCTGTCACAAGTCATTCCCTACTGGACAAGCTCTTGGTGGCCACAAACGTTGTCACTATGACGGCGGTGCTGCTGCTGCTGCGGCGGCTAACGGTAACGGTGGCGGCGGCAGCGGTGTTACTGCGTCGGAAGGAGTTGGATCTACACATACCGGTAGCCATAGCCACCGTGACTTTGACCTGAATCTTCCCGCTTTGCCTGACTTCTCTGCTGCTAAGTTGTTCACTCATGGGGAAGATGAAGTGGAGAGCCCTTTGCCTGTGAAGAGGCCGCGTCTTTTGATGGCACCCAAAATTGAAGCTGAACACTGA 807 0.5564 MALEALKSPTGPPPSFPFELDSNLHSLESWTKRKRSKRPRLDHPSSSCTTEEEYLALCLIMLARGGSAVSPTASHRHHSPPAASDSAPPDPTATTTTTAPKLSYKCSVCDKAFSSYQALGGHKASHRKLTPGAEDQSTSSAVTSTSANTTTTASNVVGGKSHECSICHKSFPTGQALGGHKRCHYDGGAAAAAAANGNGGGGSGVTASEGVGSTHTGSHSHRDFDLNLPALPDFSAAKLFTHGEDEVESPLPVKRPRLLMAPKIEAEH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1715 268 MobiDBLite consensus disorder prediction 69 98 - -
Mibi08g1715 268 Pfam C2H2-type zinc finger 104 128 - -
Mibi08g1715 268 Pfam C2H2-type zinc finger 162 186 - -
Mibi08g1715 268 Gene3D Classic Zinc Finger 101 184 - -
Mibi08g1715 268 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 32 232 IPR044653 GO:0003700
Mibi08g1715 268 MobiDBLite consensus disorder prediction 201 215 - -
Mibi08g1715 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 184 IPR013087 -
Mibi08g1715 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Mibi08g1715 268 MobiDBLite consensus disorder prediction 131 154 - -
Mibi08g1715 268 MobiDBLite consensus disorder prediction 196 220 - -
Mibi08g1715 268 MobiDBLite consensus disorder prediction 1 20 - -
Mibi08g1715 268 MobiDBLite consensus disorder prediction 125 154 - -
Mibi08g1715 268 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Mibi08g1715 268 SUPERFAMILY beta-beta-alpha zinc fingers 104 184 IPR036236 -
Mibi08g1715 268 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Mibi08g1715 268 SMART c2h2final6 104 126 IPR013087 -
Mibi08g1715 268 SMART c2h2final6 162 184 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1715 Mibi-ChrMibi08 33862628 33863434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1715 1 265 C2H2 Transcription Factor Family AT1G27730 49.446 2.51e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi08g1715 zf-C2H2_6 1.7e-12 CL0361