Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1698 ATGAGCAGTGCTCTTCCTTCCATTTCCATGGCTTCCTTCAAGAAAGACATGGATCGTATCAAAGGCCCTTGGAGTCCCGAAGAAGACGAGGCCTTACAGAGACTGGTTCAGAGTTACGGCCCTAGAAACTGGTCTCTAATAAGCAAATCCATTCCAGGTCGATCCGGCAAGTCGTGCCGTTTACGGTGGTGCAACCAGCTCTCTCCCACCGTGGAACACCGTCCTTTCACCCCCGAAGAGGACGAAACCATAATCAGAGCTCACGCCAGGTTCGGCAACAAGTGGGCCACCATCGCTCGCTTGCTCCACGGCCGCACCGACAACGCCATAAAGAACCACTGGAATTCCACCCTCAAGCGCAAATCCTCCGCCATCTCCGACGATTCCGATCACCACCACCAGCCTCTCAAAAGATCCGCCAGTGTCGGTGCCGCACCTACCTTCTCTGGTTTGTACTTGAGCCCTAGTAGCCCTTCCGGTTCCGATCTGAGCGATTCCAGTTTGCCAGCTTTGTCTCCTACGCGAGTTTGCGGGCCATTCGCCATGAACAACGCCGCCGCCGCCGCCGCCGTCAACAGCAGTCAGCCGCCGGAAACCGCCACTTCCGTCCATGATCCGCCGACGTCACTGTGCTTATCGCTTCCTGGATCTGACTCGCAGGAGGCCTCTAACCATGGATCTGGATCGAATCAGTGTATCAGTCCGATGCAGTTACCGGCAAGTCCACCGTCACAGCAAGTGCGTTTTCGGGATGGTAGTGGACAGAGATGTGATGAGTTTGGTTGGGAGAAGCAATTGTTCAGTGCGGAGTTTTTGGCGGTGATGCAGGAGATGGTAAAGAAGGAGGTGAGGAATTACATGTCTGGGATGGAGACGAAGGGTGTGTGTATTCAGACGGAAGTTATTAGGAATGCTGTGATGAAGAGTATTGGAATGGGCAGAGTTGAGTGA 951 0.5426 MSSALPSISMASFKKDMDRIKGPWSPEEDEALQRLVQSYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPTVEHRPFTPEEDETIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKSSAISDDSDHHHQPLKRSASVGAAPTFSGLYLSPSSPSGSDLSDSSLPALSPTRVCGPFAMNNAAAAAAVNSSQPPETATSVHDPPTSLCLSLPGSDSQEASNHGSGSNQCISPMQLPASPPSQQVRFRDGSGQRCDEFGWEKQLFSAEFLAVMQEMVKKEVRNYMSGMETKGVCIQTEVIRNAVMKSIGMGRVE 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1698 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 71 IPR017930 -
Mibi08g1698 316 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Mibi08g1698 316 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Mibi08g1698 316 CDD SANT 23 65 IPR001005 -
Mibi08g1698 316 Gene3D - 20 72 - -
Mibi08g1698 316 ProSiteProfiles Myb-like domain profile. 16 67 IPR001005 -
Mibi08g1698 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 122 IPR017930 -
Mibi08g1698 316 MobiDBLite consensus disorder prediction 191 253 - -
Mibi08g1698 316 Gene3D - 74 141 - -
Mibi08g1698 316 MobiDBLite consensus disorder prediction 191 251 - -
Mibi08g1698 316 SMART sant 72 120 IPR001005 -
Mibi08g1698 316 SMART sant 20 69 IPR001005 -
Mibi08g1698 316 PANTHER MYB PROTEIN-RELATED 21 182 - -
Mibi08g1698 316 FunFam MYB transcription factor 21 72 - -
Mibi08g1698 316 CDD SANT 75 118 IPR001005 -
Mibi08g1698 316 MobiDBLite consensus disorder prediction 123 137 - -
Mibi08g1698 316 MobiDBLite consensus disorder prediction 121 141 - -
Mibi08g1698 316 FunFam Transcription factor MYB44 75 121 - -
Mibi08g1698 316 Pfam Myb-like DNA-binding domain 24 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1698 Mibi-ChrMibi08 33708106 33710769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1698 18 316 MYB Transcription Factor Family AT5G67300 54.221 5.03e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mibi08g1698 Myb_DNA-bind_6 2.8e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1698 08 33708106 33710769 Mibi10g0191 10 3217498 3218448 ECH
Mibi08g1698 08 33708106 33710769 Mibi08g1698 08 33708106 33710769 ECH