Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1682 ATGCAGGTGCAACTTCCGAACCCCTTGTCGGCTTCCAATGGTGTGGCGCCGACTCCGACCACGAACCAATTTCCGGGTGCATCCTTGTACGTTGGGGATCTTGACCTGGAAGTTACCGAATCTCAGCTCTATGATCTCTTTCACCGGATGGGACAAGTTATTTCTATTCGAGTATGCAGGGATGTCAATAGCCGTCGATCCCTTGGTTACGGTTATGTCAATTTCAGTAATGCTCAGGATGCGGCTAGAGCGGTGGATGAACTGAATTTTACGCCGCTGAACAACAAGTCCATCAGGATTATGTATTCCAATCGGGATCCTAGCACTCGGAAGAGTGGATCAGCGAATATATTTATCAAGAATTTGGATAAGACCATTGACCACAAGGCTTTACACGAGACTTTTTCTGCTTTTGGGAATATTCTTTCTTGTAAAATAGCGACAGATGCATCTGGCCAGTCCAAAGGCTATGGATTTGTTCAATTTGACAAAGAAGAATCTGCGCAAAGTGCAATTGACAAGTTAAATGGCATGCTGATCAATGATAAACAGGTCTATGTAGGGCATTTTCTGCGAAGGGAAGATCGAGAGAGTGATTCTAAGAAGACAAAATTCAATAATGTCTACGTGAAAAACCTGTCAGAGTCAATGACGGAAGAAGATTTGAAGAAAACCTTTGGAGAGTATGGGACCATTACTAGTGCTGTGATAATGAGAGATGCAGATGGTAAATCAAAGTGTTTTGGTTTTGTCAACTTTGAAAATGCAGATGATGCTGCTAATGCTGTTGAGGCGCTTAACGGAAAGAAATTTGATGATAAGGAGTGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGAGAGCTTGAGTTGAAAGGACGATTTGAGGAGAGTATGAAGGAAGCTCTTGACAAAAATCAAGGGACGAACTTGTATGTCAAGAATTTGGATGATAGCATCAGTAGTGATGAGAAGCTGAAGGAACTGTTCTCTGGATTTGGTATAATAGTTTCTTGCAAGGTTATGCGGGATCTCAGTGGATTGAGCAAAGGATCAGGATTTGTGGCCTTCTCAACTCCTGAAGAAGCCTCTCGAGCTCTTGCGGAGATGAATAGTAAAATGGTTGCTGGCAAACCTCTGTATGTTGCTTATGCTCAAAGAAAAGAAGACAGAAGAGCAAGGTTACAGGCCCAATTCTCACAAATGAGGCCTGTTCCGTTGATGCCTTCTGTTGGTCCACGCATGCCAATGTATCCTCCCGGTGCTCCAGGTCTGGGACAACAATTTTTGTATGGGCAAGCTCCTCCTGCCATCATTCCTCCACAAGCTGGGTTTGGTTATCAGCAGCAACTCGTTCCTGGGATGAGGCCTGGTGGAGCTCCAATGCCAAACTTTTTTGTTCCAATGGTCCAGCAGGGTCAACAAGGTCCACGTCCTGGGGGACGCCGTGGAGCAGGTCCCGTGCAACAATCCCAGCAGCCGATGCCTCTGGTGCAGCAGCAGATGCTTCCAAGAGGACGTGCCTATCGTTACCCTCCTGGTCGCAATATGCAAGATGTTCCAATGCCAGGAGGACCTGGTGGAATGCTCTCTGCCCCTTATGACATGGGCGGTTTACCAATGCGGGATGCTGCTGGGCAACCACTGCCCAGGCAAGCATTGGCTACAGCCCTCGCAAATGCTCCACCTGAACAGCAGAGGACCATGCTTGGTGAAGCTTTATACCCTCTAGTAGAACAGCTGGAGCATGATGTGGCAGCTAAGGTCACGGGCATGCTTTTGGAGATGGACCAGCCTGAGGTATTGCATCTTATTGAATCACCTGAAGCTCTCAAGGCTAAAGTTGCTGAGGCCATGGAGGTTTTAAGAAATGTGGCTCAGCAAGCTAGCAGCCCAACCAGCCAACTGGCCTCACTCTCTCTTAATGACAACCTAGTATCTTAA 1944 0.4666 MQVQLPNPLSASNGVAPTPTTNQFPGASLYVGDLDLEVTESQLYDLFHRMGQVISIRVCRDVNSRRSLGYGYVNFSNAQDAARAVDELNFTPLNNKSIRIMYSNRDPSTRKSGSANIFIKNLDKTIDHKALHETFSAFGNILSCKIATDASGQSKGYGFVQFDKEESAQSAIDKLNGMLINDKQVYVGHFLRREDRESDSKKTKFNNVYVKNLSESMTEEDLKKTFGEYGTITSAVIMRDADGKSKCFGFVNFENADDAANAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEESMKEALDKNQGTNLYVKNLDDSISSDEKLKELFSGFGIIVSCKVMRDLSGLSKGSGFVAFSTPEEASRALAEMNSKMVAGKPLYVAYAQRKEDRRARLQAQFSQMRPVPLMPSVGPRMPMYPPGAPGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGPRPGGRRGAGPVQQSQQPMPLVQQQMLPRGRAYRYPPGRNMQDVPMPGGPGGMLSAPYDMGGLPMRDAAGQPLPRQALATALANAPPEQQRTMLGEALYPLVEQLEHDVAAKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVLRNVAQQASSPTSQLASLSLNDNLVS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1682 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 387 IPR000504 GO:0003723
Mibi08g1682 647 Gene3D - 116 189 IPR012677 -
Mibi08g1682 647 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 27 623 IPR006515 GO:0003723
Mibi08g1682 647 SMART poly_2 562 625 IPR002004 GO:0003723
Mibi08g1682 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723
Mibi08g1682 647 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723
Mibi08g1682 647 MobiDBLite consensus disorder prediction 627 647 - -
Mibi08g1682 647 SMART rrm1_1 28 101 IPR000504 GO:0003723
Mibi08g1682 647 SMART rrm1_1 207 279 IPR000504 GO:0003723
Mibi08g1682 647 SMART rrm1_1 116 188 IPR000504 GO:0003723
Mibi08g1682 647 SMART rrm1_1 310 383 IPR000504 GO:0003723
Mibi08g1682 647 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723
Mibi08g1682 647 SMART rrm2_1 207 279 IPR003954 GO:0003676
Mibi08g1682 647 SMART rrm2_1 310 383 IPR003954 GO:0003676
Mibi08g1682 647 SMART rrm2_1 28 101 IPR003954 GO:0003676
Mibi08g1682 647 SMART rrm2_1 116 188 IPR003954 GO:0003676
Mibi08g1682 647 CDD RRM1_I_PABPs 28 107 - -
Mibi08g1682 647 CDD RRM3_I_PABPs 205 284 - -
Mibi08g1682 647 FunFam Polyadenylate-binding protein 292 398 - -
Mibi08g1682 647 MobiDBLite consensus disorder prediction 472 494 - -
Mibi08g1682 647 PANTHER RNA BINDING PROTEIN 27 89 - -
Mibi08g1682 647 Gene3D - 547 629 - -
Mibi08g1682 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Mibi08g1682 647 CDD RRM2_I_PABPs 113 189 IPR045305 -
Mibi08g1682 647 FunFam Polyadenylate-binding protein 8 110 - -
Mibi08g1682 647 Gene3D - 190 292 IPR012677 -
Mibi08g1682 647 SUPERFAMILY RNA-binding domain, RBD 26 195 IPR035979 GO:0003676
Mibi08g1682 647 FunFam Polyadenylate-binding protein 116 189 - -
Mibi08g1682 647 FunFam Polyadenylate-binding protein 196 291 - -
Mibi08g1682 647 Gene3D - 293 404 IPR012677 -
Mibi08g1682 647 Gene3D - 16 115 IPR012677 -
Mibi08g1682 647 SUPERFAMILY PABC (PABP) domain 492 635 IPR036053 GO:0003723
Mibi08g1682 647 SUPERFAMILY RNA-binding domain, RBD 206 390 IPR035979 GO:0003676
Mibi08g1682 647 FunFam Polyadenylate-binding protein 546 628 - -
Mibi08g1682 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Mibi08g1682 647 CDD RRM4_I_PABPs 308 387 - -
Mibi08g1682 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 99 IPR000504 GO:0003723
Mibi08g1682 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 276 IPR000504 GO:0003723
Mibi08g1682 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Mibi08g1682 647 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 380 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1682 Mibi-ChrMibi08 33433338 33436938 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1682 1 642 Eukaryotic Initiation Factors Gene Family AT4G34110 68.111 0.0 845