Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1671 ATGCAAGGTCAGAGGGGTGCAATTGGTTCCTTGCCTGAAACCTTAGAATTCAACTGTGGGTCCACATCAAGTAATCCTACTGTGGATCAGCAAATATGCTGGAATAATATGCGGAATCCTGGTGATAATGATAGTGATATACCTGAGTATTTACTTCCTTTGAGTGATATGAACCCACCATTTATGAATTCTATAAATCATGAATGGCAGAATTCAAGTGGGTGGAGCTTAGGTGAGCCCAGTTCTAGTAATACCCACAGTGAAACTAACAGTAACCAGCAGAAGAGGGAACTTGGATGGACATCTCCAATTAGTGCTAGTGCTGCAGCTGGTCCAAGAGTAGAAGGAAGGCACTTTGAGCCAACTATTGTTCTTTCAGCTGACAATGTCAACTCCAGTCCTATGCATATTCACAACTCAAATTCTCACATGTCAGCGAATCTCAACTTAAATGCTGCCTTGGCAGATAGTGGTGGTGAAGACAGCTTGCATTTGGAGCATCCTAACTCGCACAAATCCAGTGGATCAGTAAATGAGTGTGTTCCACCTGGCATTGTTTCTGGTCCTTTTCCTCCTCCCCCTCCTCCTTCTGGAAATAGCAGTTTCATGCTAGAAGGCACTGATGCTAGGTCGGGATGTTCTCTAGATGCGCGTCGTGCGTCTTGCAAAAGAAAGGCAATTGAAGAAACTGTTGGACCATCTTTGGATGGTGGAAGTTCTAGTTCTAGTCAGCATATAGAAAGTAGTGCTTGGAACACTCTTCCAACTCAGGATAATGCCGGGAGCAGTTTAAGCAGATCTGCTATATCTGAACAGGTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAGTCCCTGAAAACCTTCCTGATTCAAATGATGTGGGGAGCACAGAAAGCTTTCGCCGGAATCTCCGTTTGAGGATCAGTCCTTCAAGCCAACAAAATTCAATCCCTCCCTCTGCATTCTCTACTGGAAGTGTGATAAGGCATCCTAGTATGTCAACCTCTTCAATGTCACAAAGGTTCCCGCCTATTAATAACTCCTTGGACCTGAGGGCAGCTCCAATGGTAGATAATATAATTCCTCAAAGCCAGCCCCTTGTGATCCATGTTCCTTCTTTACCAAGGAATATGCAATCAGCAAGATGGAATGGTAGTTCTAGCTCAAGCAGCAGCCAATCATCAAGTCCAATCCTTTGTGCAGATAGGGATAACCAGCCACGGGAAGAATCAAGTTCAAGAAGTATTTCTAGAAACATTTTTGATCGGGGCCCAGTGTTTGTACCTGCAACTGATTTAAGAAATCTAGTTCGAAATCCAACAATTAGAGCTTCAGGTAGTGCAAATGTTAGCATGTCAGGAAATGTTGCTTCTTCTTCACGGGCTGGATCAAATTCAGCTATCAATCAATCATCTGCCTCAGCGTGGGTTTCTCGTCCTAATCCTCCACAGTATCCACGTAGATTGTCTGAATATGTCCGTCGGTCATTGTTTTCTCCTCCTTCTGAGACTGCTGGAAGTCAAAATCCAAGCAGTAACTATTCTTCTTTGCGCTCTGGTCCTACTGCTTCATCTGAAGCAAGGGTGGCATCATCTGGAGCTGGTGGCCAAGGGCATCATCAATCACACCCTAGATCTTTGTGGATGGAGAGGCAAGGTGATGCTGAATTTGGAATTCCTTATTCATTGCGAAGTTTGGCTGCTGCTGGTGAAGGAAGTAGTAGTAGACTAGTATCTGAGCTTCGTAATGTTTTGGGCCTCATGCGTAGGGGTGGAGGCCTGCGATTTGAGGATGTTATGATTCTTGACCAATCAGTCTTTTCTGGGATGGCTGATATTCATGATCGACACAGGGATATGCGTCTTGATGTTGATAACATGTCTTACGAGGAATTATTGGCTCTGGAAGAGCGAATTGGAAACGTGAGTACTGGATTGAGTGAAGAAACCGTACTGAAACTTTTGAAACAGAAGAAGTATTCAGTTGAAACAGGATCTAAGGTTGAGGCAGAACCGTGCTGTGTCTGTCAGGAGGAGTATAAAGACGGAGATGATATTGGAACCCTTGATTGTGGGCATGATTACCACAAAGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACAGGCTTGTCGTCGTGA 2166 0.4437 MQGQRGAIGSLPETLEFNCGSTSSNPTVDQQICWNNMRNPGDNDSDIPEYLLPLSDMNPPFMNSINHEWQNSSGWSLGEPSSSNTHSETNSNQQKRELGWTSPISASAAAGPRVEGRHFEPTIVLSADNVNSSPMHIHNSNSHMSANLNLNAALADSGGEDSLHLEHPNSHKSSGSVNECVPPGIVSGPFPPPPPPSGNSSFMLEGTDARSGCSLDARRASCKRKAIEETVGPSLDGGSSSSSQHIESSAWNTLPTQDNAGSSLSRSAISEQVNARLGLGMGDEVPENLPDSNDVGSTESFRRNLRLRISPSSQQNSIPPSAFSTGSVIRHPSMSTSSMSQRFPPINNSLDLRAAPMVDNIIPQSQPLVIHVPSLPRNMQSARWNGSSSSSSSQSSSPILCADRDNQPREESSSRSISRNIFDRGPVFVPATDLRNLVRNPTIRASGSANVSMSGNVASSSRAGSNSAINQSSASAWVSRPNPPQYPRRLSEYVRRSLFSPPSETAGSQNPSSNYSSLRSGPTASSEARVASSGAGGQGHHQSHPRSLWMERQGDAEFGIPYSLRSLAAAGEGSSSRLVSELRNVLGLMRRGGGLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLLKQKKYSVETGSKVEAEPCCVCQEEYKDGDDIGTLDCGHDYHKDCIKQWLMHKNLCPICKTTGLSS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1671 721 MobiDBLite consensus disorder prediction 499 545 - -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 186 206 - -
Mibi08g1671 721 Pfam Ring finger domain 674 715 IPR001841 -
Mibi08g1671 721 CDD RING-H2_TTC3 673 715 - -
Mibi08g1671 721 FunFam E3 ubiquitin-protein ligase MBR2 642 719 - -
Mibi08g1671 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 718 IPR013083 -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 234 264 - -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 231 264 - -
Mibi08g1671 721 SUPERFAMILY RING/U-box 673 717 - -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 380 402 - -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 308 342 - -
Mibi08g1671 721 SMART ring_2 674 714 IPR001841 -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 280 299 - -
Mibi08g1671 721 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 218 720 IPR045191 GO:0061630
Mibi08g1671 721 ProSiteProfiles Zinc finger RING-type profile. 674 715 IPR001841 -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 72 101 - -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 446 480 - -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 446 485 - -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 501 540 - -
Mibi08g1671 721 MobiDBLite consensus disorder prediction 380 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1671 Mibi-ChrMibi08 33287203 33290725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1671 220 721 C3H Transcription Factor Family AT2G15530 38.623 1.86e-84 280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1671 08 33287203 33290725 Mibi05g0972 05 12127391 12131374 CCT
Mibi08g1671 08 33287203 33290725 Mibi08g1671 08 33287203 33290725 ECH