Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1664 ATGGCTCTATTATTAGACAATTGTGAGAGCATCTTACTGTCCTTGGACTCTCACAAATCTGTGCCGGCTCCTTTCCTGACCAAGACTTACCAACTAGTGGATGATCCAGCCACCGATCACATTGTTTCTTGGGGTGAAGACGACACCACCTTCGTCGTCTGGCGTCCTCCTGAGTTCGCCAGAGATCTCCTCCCCAACTACTTCAAGCACAATAATTTCTCCAGCTTCGTCCGCCAGCTTAACACTTACGGTTTTAGGAAGATCGTGCCTGATAGATGGGAGTTCGCTAATGAGTTCTTCAGGAGAGGAGAGAAGCATTTACTGTGTGAGATCCACAGAAGAAAGACAGCTCAGCTTCATCATCACCAGAATATTCCACTTAATCATCCTCACCATCATCATCATCATCAGCTTCCCTTGGGCCTCAACGTTCCTTCTTTCTTTCCCTTCTCAGCCTCCAGAATCAGTGTCTCCCCGTCGAACGACTCAGACGACCAGCCGCCGTATTGGTGTGACTCGCCGCCGCCGCCGCCGCCACTCACTTCTCCGATCAGCGGTGGGATGGTGACGCTGTCGGAGGACAACGAAAGACTGAGAAGAAGCAACAATATGCTAATGTCTGAGCTGGCCCACTTGAAGAAACTCTATAACGACATCATCTATTTCGTCCAGAATCATGTCAAGCCTGTCTCTCCCAGCAATTCTTTCTCTTCTTCCTCTTTCCTTTCACCATCACCTACCTCTCATCATCCTATGCTTTCTTCTGCTACTAACGTTTCCATGGTTCAAAGGCAAATGAACCAGATTTTTGGGTTTTGTTCTAATAGCCCTAAGCAAACTACCCCTCAACTTTCTTGTATGGTGAGACCTCCCATGCCAAGAAGTTCTGTCTCCATTGTGGAAGAACCGGCCTGCACTAATAATAATAATACCAAGCTTTTTGGTGTGTCACTTCAATCCAGGAAAAGGGTTCATCCTGATTCTGATTCTGTTGTTACTCCTCCCATTTCCGAAATGAACAAGGCTCGTTTGGTCTTGGAAAAAGATGATGATCTTGCCTTGAATCTCATGCCACCTTCATCATGTTAG 1089 0.4692 MALLLDNCESILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRRGEKHLLCEIHRRKTAQLHHHQNIPLNHPHHHHHHQLPLGLNVPSFFPFSASRISVSPSNDSDDQPPYWCDSPPPPPPLTSPISGGMVTLSEDNERLRRSNNMLMSELAHLKKLYNDIIYFVQNHVKPVSPSNSFSSSSFLSPSPTSHHPMLSSATNVSMVQRQMNQIFGFCSNSPKQTTPQLSCMVRPPMPRSSVSIVEEPACTNNNNTKLFGVSLQSRKRVHPDSDSVVTPPISEMNKARLVLEKDDDLALNLMPPSSC 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1664 362 Coils Coil 195 215 - -
Mibi08g1664 362 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi08g1664 362 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Mibi08g1664 362 MobiDBLite consensus disorder prediction 157 177 - -
Mibi08g1664 362 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi08g1664 362 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 274 IPR027725 -
Mibi08g1664 362 FunFam Heat stress transcription factor B-4 17 115 - -
Mibi08g1664 362 Gene3D - 17 116 IPR036388 -
Mibi08g1664 362 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi08g1664 362 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi08g1664 362 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mibi08g1664 362 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1664 Mibi-ChrMibi08 33216111 33217305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1664 1 361 HSF AT1G46264 53.927 9.42e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mibi08g1664 HSF_DNA-bind 2.7e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g1664 08 33216111 33217305 Mibi05g0981 05 12185597 12186792 CCT
Mibi08g1664 08 33216111 33217305 Mibi08g1664 08 33216111 33217305 ECH