Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1618 ATGGAAGACAGCTTGTCTGATATGTTTGAAGACAAAGACTTGGACTTAGTTGGAGACGATCTTCTTGCCATTTTGGACTCACTCGAGGACTTCACCAATTTTCCTCCCGTTGAAGAATCCCTTACTGTTACCTCCATCGAGAATAACAACGATGAAACCACAAGTGGCCTACAGTATAATTCAGTGACCACAACCAAAGGCAAGAGACAGAAGATTTCTCATAATGAGTCATCATGTGAGGAGCCTAAGATATCTCATATAACTGTGGAGCGCAACCGAAGAAAGCAAATGAATGAGCACTTGTCCGTCTTGAGGTCCCTCATGCCTTGCTTCTATGTCAAAAGAGGTGATCAAGCATCAATAATAGGAGGAGTGGTAGAGTACATAAACGAGTTGCAGCAACTTCTACAATCCCTGGAAGCCAAGAAACAAAGAAAGGTGTACAACGAAGTTCTAAGCCCTAGGCTGGTGTCAAGTCCAAGGCTTTCTCCAAGAGTGATGCCACCGGTGAGCCCTAGGCTTAACCTACCCATTAGCCCTGGTACGCCTCAACCTGGTAGCCCCTACAAGCCCCATCAACCAATAAGACTTTCATCCAACTCTCTAGAACCTTCTCCTACCACTTCTTCTGCTTCTTCCTCCATTAACGATAATATCAACGACCTTGTTGCTAACTCCAAGTCCGCCATTGCTGACGTCGAGGTTAAGTTCTCTGGGCCCCACGTGCTGTTAAAAACACTGTCTCCTCCAATCCCTGGTCAGGCTGTAAAGATCATCTCAGCTCTTGAAGATCTGGCCCTGGAAATCCTTCAGGTCACCATCACCTCTGCTCAACAAGGAGTTCTTAACTCATTTACCATCAAGATTGGAGTTGAATGTCAGCTCAGTGCCGAGGATCTGGCTCAACAAGTTCAGCAAACTTTCTCACCACATGGGCTTCCCTCGTAA 948 0.461 MEDSLSDMFEDKDLDLVGDDLLAILDSLEDFTNFPPVEESLTVTSIENNNDETTSGLQYNSVTTTKGKRQKISHNESSCEEPKISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVEYINELQQLLQSLEAKKQRKVYNEVLSPRLVSSPRLSPRVMPPVSPRLNLPISPGTPQPGSPYKPHQPIRLSSNSLEPSPTTSSASSSINDNINDLVANSKSAIADVEVKFSGPHVLLKTLSPPIPGQAVKIISALEDLALEILQVTITSAQQGVLNSFTIKIGVECQLSAEDLAQQVQQTFSPHGLPS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1618 315 MobiDBLite consensus disorder prediction 165 190 - -
Mibi08g1618 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Mibi08g1618 315 SMART finulus 87 138 IPR011598 GO:0046983
Mibi08g1618 315 MobiDBLite consensus disorder prediction 159 215 - -
Mibi08g1618 315 PANTHER TRANSCRIPTION FACTOR FAMA 4 308 IPR044283 GO:0003700|GO:0010052
Mibi08g1618 315 FunFam Transcription factor SPEECHLESS 70 147 - -
Mibi08g1618 315 Pfam Helix-loop-helix DNA-binding domain 83 133 IPR011598 GO:0046983
Mibi08g1618 315 CDD bHLH_AtFAMA_like 84 155 - -
Mibi08g1618 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 154 IPR036638 GO:0046983
Mibi08g1618 315 Gene3D - 62 147 IPR036638 GO:0046983
Mibi08g1618 315 MobiDBLite consensus disorder prediction 193 215 - -
Mibi08g1618 315 Coils Coil 125 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1618 Mibi-ChrMibi08 32722982 32725600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1618 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 49.422 6.35e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi08g1618 HLH 3.4e-10 No_clan