Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1594 ATGATAATCAAGCGGAACCTGAAAACCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACTCGGCTGGGGACGACGATGACTTCTCCGCATCTCGAAAGAAGAGGAAGACTAGTAATAATAATGGTTATTACCCTTTGAATCTTCTCGGCGATGTCGCCGCAGGTATTCTTCCTGTTAGCTTCCATGGATTATTGGGCGCTGCTGGTGTTTCTTCTGAGAAGGGATTCTCTGCTTCATGGTGTACCGAAGTTTCGTGTTCCCCTGTTGAGGCTGAGTCAAAGTCTAGGGGTGAGAACTCTGTAACAGCTAAGATGAATCGGCCTGTAGAGGAACCACGGCCTCCGCTGGTTAGAACTTCAAGAGGACGGGTTCAGGTACTTCCTTCTCGTTTCAATGATTCAGTTATTGAGAATTGGAGGAAAGAGAGTAAGACGAACTCTCGTGATTATAGTTATGAAGATGAATTTGATAGTAGGAAGGAGGATAGTTTTAGGACACCGAAATCTTACAGTCAGAATATCAGGAAAGGGAGGGGGGATGATAAAATTGGGTATAAGTCTCGAAAGTATTCGGCATTGTATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTAGAGGGGATAGGACTGTAAGGTATAGGAGTTTTGATACGAGGAAGTATTCAACTTGTAAGGCACTCAACCCAAAGCGGGAGCGATTAATTGAAGATGAGAGACGTGGATTTATGTATGTGGACGCCGTTGATGTAAGTGGGAATGAGAGGTTTTTGAAGGAGAATGGCGAGAAGAAGGATGGATTGTATGGACCAGAAGACTTTTATGCAGGTGACATAGTGTGGGCCAAAGCAGGGAAGAAGGAGCCCTTTTGGCCAGCCATTGTCATCGATCCAATGTCTCAGGCACCTGAGCTGGTCCTCAGGTCTTGTATACCTGATGCAGCTTGTGTGATGTTTCTTGGGTATTCTGCAAATGAAAATCGAAGGGACTATGCATGGGTGAAGCGTGGGATGATTTTCCCATTTATAGATTATGTAGACAGGTTTCAGGGACAGGTGGAATTGAGTTACTATAGCCCTTCTGATTTTCAAGTAGCAATAGAGGAGGCATTCTTGGCTGATCGGGGGTTTACGGAGAGGTTGATAGCAGATATAAATTTAGCAGCTGGCAACACAGGGTATGATGAAACCTTTCCAAGAGGCATGCACGAGGCTGCTGGTTCAAAGTATGCTGGATGTCACTTTCTGAGCCAGGAATTTTTTGATAAGAGGAAAGATACACGACCCTGTGAAGTTTGTGGCTTGGATCTTCCTTTCAAAACATCAAAGAGAACGAAGGATTCAACTCCTGGCGGACAGTTTTTATGTAAAACATGTGCCAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAATATGGAATCATTCCGACAGTGGAAGCTGGGTGCGTTGTGATGGATGTAAAGTTTGGGTGCATGCAGAATGCGACAAAATTTCCAGCAACCTTTTCAAGAATCTTGGAGGAACTGATTATTACTGCCCGACTTGTAAAGCAAAGTTTGACTTTGAGCTATCTGATTCAGAAAAGTCACAGCCAAAAGTCAAATGGAACAAGAACAATGGGCAGCTAGTGCTACCAAACAAAGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCTAGCCTTCACTTAGTTGTGTGCAAATGCGGTTATTGTGGGACGGAGAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATCGAGAAATTGGAGAACAAGTGTTAGGGTGAAAGGCTCTATGCTCCCTCTGGAACAATGGATGCTGCAGCTGGCAGAATTTCATGCAAATGCTCAAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAAGAAAGGAAGCAGAAGTTGCTTGCATTTTTGCAAGAGAAGTATGAACCAGTTTATGCTAAGTGGACAACAGAACGGTGTGCTGTGTGTAGATGGGTAGAAGACTGGGACTATAATAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAGTGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCTAACATTAAACGAGAGTGTTGTCTTTGTCCTGTAAAGGGTGGTGCGCTAAAGCCAACCGATGTGGACACACTATGGGTGCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAAAAAATGGAGCCTGCTTTGGGTATTCTGAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATATGTAAGCAAATTCATGGCTCATGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCGTCAAGGGCTGGATACCGCATGGAGTTGCATTGTTCAGAGAAAAATGGCAGGCAGACAACAAAAATGGTTTCTTATTGTGCATACCACAGGGCTCCAAATTTAGATACTGTTTTGATTATGCAAACCCCTCTCGGAGTTATTTCCACCAAAAGCCTTCTCCAAAACAAGAAAAAATATGGGTCAAGGTTAATTTCGTCTAATCGAATAAAGCTAGAAGACACTCCTGTAGAGAACATTGAGGATGAACCATTTTCTGCTGCAAGGTGCCGTGTCTTTCAAAGAACAAATCTCAGCAAAAAGAGGGCAGCGGATGAAGCTATTTCTCATCAAGTGAAAGGTCACTGCCATCATCCATTAGACACAATTCGGAGATTAAATGCATACCGGGTAATAGAGGATCCTCCAACATTTTCTTCTTTTAGAGAACGTTTGTACCACTTACAGAGAACTGAAAATGAACGGGTTTGCTTTGGTAGATCGGGTATACATGGATGGGGCCTCTTTGCGCGTAGAAATATACAAGAAGGAGAAATGGTTCTTGAGTATCGTGGTGAACAAGTGAGACGCAGCATGGCTGATCTGAGGGAGGCGCATTATAAGAAAGAAGGCAAAGATTGCTATCTTTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGAAATATTGCCCGGCTTATCAACCATTCTTGTATGCCGAATTGCTATGCAAGAATTATGAGCGTCGGTGATGATGAGAGCCGTATTGTACTCATCGCCAAGACCAATGTTCCCGCTGGTGATGAACTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAAAACAAAGTGCCATGTTTATGTAAATCTCCTAATTGCCGGAAATTCATGAATTAG 3288 0.4304 MIIKRNLKTQMPSLKRCKLGDSAGDDDDFSASRKKRKTSNNNGYYPLNLLGDVAAGILPVSFHGLLGAAGVSSEKGFSASWCTEVSCSPVEAESKSRGENSVTAKMNRPVEEPRPPLVRTSRGRVQVLPSRFNDSVIENWRKESKTNSRDYSYEDEFDSRKEDSFRTPKSYSQNIRKGRGDDKIGYKSRKYSALYEEEEEEEEEEEVRGDRTVRYRSFDTRKYSTCKALNPKRERLIEDERRGFMYVDAVDVSGNERFLKENGEKKDGLYGPEDFYAGDIVWAKAGKKEPFWPAIVIDPMSQAPELVLRSCIPDAACVMFLGYSANENRRDYAWVKRGMIFPFIDYVDRFQGQVELSYYSPSDFQVAIEEAFLADRGFTERLIADINLAAGNTGYDETFPRGMHEAAGSKYAGCHFLSQEFFDKRKDTRPCEVCGLDLPFKTSKRTKDSTPGGQFLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGYCGTEKQALSEWERHTGSKSRNWRTSVRVKGSMLPLEQWMLQLAEFHANAQVSVKPKKPSLKERKQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPNIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSEKNGRQTTKMVSYCAYHRAPNLDTVLIMQTPLGVISTKSLLQNKKKYGSRLISSNRIKLEDTPVENIEDEPFSAARCRVFQRTNLSKKRAADEAISHQVKGHCHHPLDTIRRLNAYRVIEDPPTFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSMADLREAHYKKEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVPAGDELTYDYLFDPDEPDENKVPCLCKSPNCRKFMN 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1594 1095 MobiDBLite consensus disorder prediction 19 35 - -
Mibi08g1594 1095 Gene3D SET domain 848 1095 IPR046341 -
Mibi08g1594 1095 SMART set_7 953 1076 IPR001214 GO:0005515
Mibi08g1594 1095 CDD PHD_TCF19_like 470 520 - -
Mibi08g1594 1095 MobiDBLite consensus disorder prediction 148 167 - -
Mibi08g1594 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 713 832 IPR013083 -
Mibi08g1594 1095 SUPERFAMILY SET domain 946 1092 IPR046341 -
Mibi08g1594 1095 Pfam SET domain 964 1069 IPR001214 GO:0005515
Mibi08g1594 1095 PANTHER PHD FINGER PROTEINS 22 536 - -
Mibi08g1594 1095 ProSiteProfiles SET domain profile. 953 1070 IPR001214 GO:0005515
Mibi08g1594 1095 SUPERFAMILY Tudor/PWWP/MBT 270 374 - -
Mibi08g1594 1095 Pfam PHD-finger 469 522 IPR019787 -
Mibi08g1594 1095 SUPERFAMILY FYVE/PHD zinc finger 468 524 IPR011011 -
Mibi08g1594 1095 CDD PHD_ATX3_4_5_like 663 709 IPR042011 -
Mibi08g1594 1095 Pfam PHD-zinc-finger like domain 717 829 - -
Mibi08g1594 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 712 IPR013083 -
Mibi08g1594 1095 MobiDBLite consensus disorder prediction 16 41 - -
Mibi08g1594 1095 ProSiteProfiles Zinc finger PHD-type profile. 661 712 IPR019787 -
Mibi08g1594 1095 ProSitePatterns Zinc finger PHD-type signature. 664 709 IPR019786 -
Mibi08g1594 1095 Gene3D - 272 376 - -
Mibi08g1594 1095 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1095 IPR025780 -
Mibi08g1594 1095 ProSiteProfiles PWWP domain profile. 277 346 IPR000313 -
Mibi08g1594 1095 ProSiteProfiles Zinc finger PHD-type profile. 467 523 IPR019787 -
Mibi08g1594 1095 CDD ePHD_ATX3_4_5_like 718 829 IPR041955 -
Mibi08g1594 1095 FunFam Histone-lysine N-methyltransferase 927 1095 - -
Mibi08g1594 1095 SMART PostSET_3 1079 1095 IPR003616 -
Mibi08g1594 1095 MobiDBLite consensus disorder prediction 92 118 - -
Mibi08g1594 1095 MobiDBLite consensus disorder prediction 148 179 - -
Mibi08g1594 1095 CDD SET_SETD1-like 940 1091 - -
Mibi08g1594 1095 SUPERFAMILY FYVE/PHD zinc finger 662 726 IPR011011 -
Mibi08g1594 1095 FunFam Histone-lysine N-methyltransferase 651 712 - -
Mibi08g1594 1095 FunFam Histone-lysine N-methyltransferase 713 832 - -
Mibi08g1594 1095 Pfam PWWP domain 278 371 IPR000313 -
Mibi08g1594 1095 Pfam PHD-finger 676 710 - -
Mibi08g1594 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 464 525 IPR013083 -
Mibi08g1594 1095 ProSiteProfiles Extended PHD (ePHD) domain profile. 715 830 IPR034732 -
Mibi08g1594 1095 ProSiteProfiles Post-SET domain profile. 1079 1095 IPR003616 -
Mibi08g1594 1095 SMART PHD_3 774 830 IPR001965 -
Mibi08g1594 1095 SMART PHD_3 663 710 IPR001965 -
Mibi08g1594 1095 SMART PHD_3 469 521 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1594 Mibi-ChrMibi08 32420673 32430463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1594 664 829 C2H2 Transcription Factor Family AT3G14740 32.948 4.40e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi08g1594 zf-HC5HC2H_2 2.9e-27 CL0390