Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1553 ATGGCGGACGATTCAATTGATCACGCCTCACTCATTCCAGCATCTGAATTACTTTTTCATATTGTCCTTAGTATATCTGATATCACCAAAGCAGCCAGTGAGATTCTGATTCAGAAGGATAATTTCAGAAAATTCTCAACTTACCTGGAGAAAGTTTCTGTAATATTAAAAGAACTATCAAAAGATGACATACACCATGCAGAGAGGTTGAAAAATTCCCTGGCTGTCCTGAACCAAGAAGTTAAAGTTGCTAAACAGTTGGTTTCTGAGTGCAACTGCAAGAGTAAGCTTTATCTTTTGATCAGTTCCAGGAAGATCGCTGAGAATCTGAAATGTTCTACGGAAAACATAAGTCGAGCATTGAGCCTTATCCCTCTCACCCCTTTGGATGTTTCTTCTGGTCTAAGCAGACAAATAAGTGAGCTATGCCAGAACATGTTAGATGATGAGTATAAAGCAGCTGCAGCAGAAGAAAAAATTCTGGAAAAACTCGAGTCAGCGATACAAGAAGGAAATGTTGATTGCTCTTACGTGAATCATTTGCTAGCTCATACTGTGGATGTCATTGGGATCTCAACTGAACATGCTGTTATAAAGAGAGAATTCAAAGAGTTGAAAAGTGACATGCAAATGTCTGAGTCAAGAAGAGATATAGCAGAAGCTCTACATATGGAGCAGATTGTTGGATTACTTGAAAAAGCTGATTCTGTTACTTCATCACAAGAGAAGGAGAAGAAGTACTTTGAAAAGCGAAATTCCCTTGGACGACAGCTGTTGGAGCCGTTACATTCATTTTACTGTCCAATCTCACTTGACATCATGGAAGATCCTGTGGAGACTTCTTCTGGCAAGACATTTGAGAGAAAGGCAATAGAGAAGTGGCTTGCAGAAGGGAATAAGAACTGTCCCTTAACGATGTTGCCTCTGGACACTTCAAAATTAAGACCTAATAAGACTCTTCGACAGTCAATTCAAGAATGGAAAGATAGGAATACCATCATTACCCTTTCTACCCTTAAGTCCAAGCTTGAGAGTGATGATGAAGAGGAAATGTTGCAATCCTTAGAAAAATTGCAGGGCCTCTGCTTGGAAAGACAGATGCACCGAGAATGGGTAAAGATGGAGAATTACATCACAACTCTGATCAAGCTCCTTGGTGCTAAAAATAGAGAAATAAGGAAGCATGTTCTCTCCACCCTGTCTTTGCTTGCAAAGGACAATGAAGAGAACAAGGAAGATATTGCTAAAGTTGATCATGCACTAGAATCAATTGTTCGCTCACTTGCACGTCAAATAGAGGAAAGCAAGTTAGCAGTGGACTTGCTGTTAGAATTGTCTAGAAGTACTCCGGTGCGTGATCTCATAGGAGATGTTCAAGGATGCATACTCCTCCTGGTAACAATGGTAAACAGTGATGATGCTGAAGCAGCCCATAATGCACGTGAGCTTCTTGATAACCTCTCCTTCCTTAACCAGAATGTTATAGAGATGGCAAAGGCAAATTATCTCAAGCCTTTGCTGCAGAACCTTTCTTCAGGAACAGAAAATGTGAAGATGATCATGTCCAAAACTTTATCAGAGATTGAATTGACTGACCATAATAAAACATCAATAGTCAAAGAAGGGGCACTACAGCCACTTCTTCAGTTGCTCTCTAATCCTGACGTGCAAATTAAGGAAATAGCTGTAAAAGCTCTTCTGCAGCTTTCAAGCTTGCCAGAAAATGGCCTACAGATGATTAGGGAGGGTGTGGCTCAATTACTATTCGAGCTGCTATATCGCCACAGTTTACAATCGACTGTTCTGCGGGAACAGGCGGCTGCCACTATGATGCATCTTGCCATGTCAACCACTCACCAACGAGCAGATGAAGTCCAGGTTTCATTGTTAGATTCTGAGGATGACGTGTTTAGATTCTTTTCACTTGTTTCCTTCACCGGACCTGATGTACAAGGCAAGATTCTGAAAACTTTCCTGGCAATGTGCCAATCTCCCTCTGGCCTCATCGTCAGAGAAAGGTTAAGACAGCTCTCAGCTGTCCAAGTATTAGTTCAATTGTTAGAGCTTGATAACCGAACTGTGCGGGCAAATGCCGTGAATCTGTTCTATTACTTGACAGAAGGCGGTGATTGCACAAACTTTACATCACATGTAACTGAACGATGTATCAATGTCTTGCTCACCATCATCAAGACTACTGATGATGCAGAAGAGGTTGTTTCTGCTATGGGCATCATCTCAAGACTTCCAAGGGAACCGCAACTAACCCGGTGGCTTGTAGATTCTGGGGCAGTTAAAATTATCTTGGATTGTCTTTCGGATCGACACAAGCATGCGTCACACAAACGGCAAGTCATTGAGAATTCTGTTCAAGCTCTTTGCCGTTTTACGGTCTCAACAAACCTTGTGTGGCAAAAGGCAGTAGCTCAAGAGGGCACAATCCCCATCCTGGTGCAATTGCTGGATTCTGGGACATCTCTTTCCAAACAAAATGCAGCCACTTCAATCAAGCAGTTTTCAGAAAGCTCGTGGCTCTTAAGCAAGCCGATAGAAAAGCCGGGTATATTCAAATTCTGCTTTGTACCTCATGAAATCGGTTGCCCAGCACACCTGGGAACCTGTACAGTTGAATCGTCATTCTGCATCATAGAGGCTGGCGCTTTGAAGCCCCTTGTGAGGTTGCTTAGAGAGCAAGAAATTGGAACAAGTGAAGCTTCCTTAGATGCACTTTTGACTTTGATTCATGGTGGAACACCACAGGGTGGATGTAAGGTACTTGCAGATGCAGATGCTATTACTCCACTGATAAATTTATTGAGTCTTCAGTCTGCAAGATTGCAGGAAAAAATTCTAGTAGCATTAGAGAAAATATTTCAAGTGGATGAAATAAAGAACAAGTATAAAGGCTCAGCCACAATGCCATTAGTAGACATGACCCAAAAGAAAGATAGTCGCTTGAGAAGTCTAGCTGCCAGAGTCCTTGCACAATTGGGTGTTCTTGAGAAACAGTCTTCTTATTTTTAA 3024 0.4177 MADDSIDHASLIPASELLFHIVLSISDITKAASEILIQKDNFRKFSTYLEKVSVILKELSKDDIHHAERLKNSLAVLNQEVKVAKQLVSECNCKSKLYLLISSRKIAENLKCSTENISRALSLIPLTPLDVSSGLSRQISELCQNMLDDEYKAAAAEEKILEKLESAIQEGNVDCSYVNHLLAHTVDVIGISTEHAVIKREFKELKSDMQMSESRRDIAEALHMEQIVGLLEKADSVTSSQEKEKKYFEKRNSLGRQLLEPLHSFYCPISLDIMEDPVETSSGKTFERKAIEKWLAEGNKNCPLTMLPLDTSKLRPNKTLRQSIQEWKDRNTIITLSTLKSKLESDDEEEMLQSLEKLQGLCLERQMHREWVKMENYITTLIKLLGAKNREIRKHVLSTLSLLAKDNEENKEDIAKVDHALESIVRSLARQIEESKLAVDLLLELSRSTPVRDLIGDVQGCILLLVTMVNSDDAEAAHNARELLDNLSFLNQNVIEMAKANYLKPLLQNLSSGTENVKMIMSKTLSEIELTDHNKTSIVKEGALQPLLQLLSNPDVQIKEIAVKALLQLSSLPENGLQMIREGVAQLLFELLYRHSLQSTVLREQAAATMMHLAMSTTHQRADEVQVSLLDSEDDVFRFFSLVSFTGPDVQGKILKTFLAMCQSPSGLIVRERLRQLSAVQVLVQLLELDNRTVRANAVNLFYYLTEGGDCTNFTSHVTERCINVLLTIIKTTDDAEEVVSAMGIISRLPREPQLTRWLVDSGAVKIILDCLSDRHKHASHKRQVIENSVQALCRFTVSTNLVWQKAVAQEGTIPILVQLLDSGTSLSKQNAATSIKQFSESSWLLSKPIEKPGIFKFCFVPHEIGCPAHLGTCTVESSFCIIEAGALKPLVRLLREQEIGTSEASLDALLTLIHGGTPQGGCKVLADADAITPLINLLSLQSARLQEKILVALEKIFQVDEIKNKYKGSATMPLVDMTQKKDSRLRSLAARVLAQLGVLEKQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1553 1007 Gene3D - 866 1004 IPR011989 -
Mibi08g1553 1007 SUPERFAMILY RING/U-box 250 333 - -
Mibi08g1553 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Mibi08g1553 1007 Pfam MCAfunc domain 25 136 IPR045766 -
Mibi08g1553 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Mibi08g1553 1007 CDD RING-Ubox_PUB 265 306 IPR045210 -
Mibi08g1553 1007 Coils Coil 67 87 - -
Mibi08g1553 1007 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Mibi08g1553 1007 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Mibi08g1553 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1007 - -
Mibi08g1553 1007 Gene3D - 435 857 IPR011989 -
Mibi08g1553 1007 Gene3D - 329 434 IPR011989 -
Mibi08g1553 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 328 IPR013083 -
Mibi08g1553 1007 SUPERFAMILY ARM repeat 878 998 IPR016024 -
Mibi08g1553 1007 SMART arm_5 918 959 IPR000225 GO:0005515
Mibi08g1553 1007 SMART arm_5 365 405 IPR000225 GO:0005515
Mibi08g1553 1007 SMART arm_5 448 489 IPR000225 GO:0005515
Mibi08g1553 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Mibi08g1553 1007 SMART arm_5 531 571 IPR000225 GO:0005515
Mibi08g1553 1007 SMART arm_5 666 707 IPR000225 GO:0005515
Mibi08g1553 1007 SMART arm_5 407 447 IPR000225 GO:0005515
Mibi08g1553 1007 SMART arm_5 800 841 IPR000225 GO:0005515
Mibi08g1553 1007 SMART arm_5 752 798 IPR000225 GO:0005515
Mibi08g1553 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Mibi08g1553 1007 SUPERFAMILY ARM repeat 503 850 IPR016024 -
Mibi08g1553 1007 SUPERFAMILY ARM repeat 335 528 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1553 Mibi-ChrMibi08 31969117 31973193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1553 263 1007 U-box Gene Family AT1G76390 28.841 9.67e-65 233