Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1547 ATGGCGGGTTCTGAGACGAAGCTTGTGCAGGAGTTGATTTTGTATGCAGCGAGCGCTGCGTTGAGTTGCTTGGTCTTGTTTGTGGGTCTCCGGCAACTCGACCCAAACCGTGAGGCTTCAAAGAAGGCTCTTGAGCATAAGAAGGAGATTGCCAAACGTCTGGGTCGTCCTCTTATTCAGACTAACCCTTATGAGGATGTTATTGCATGTGATGTTATAAATCCTGATGACATTGATGTGGAGTTTGATTCCATTGGAGGGCTGGAAAAGATCAAGCAAGCTTTATTTGAGCTTGTTATACTGCCTCTTAAACGACCAGAGCTGTTTTCTTATGGCAAGCTTCTTGGACCACAGAAAGGGGTATTGTTGTATGGCCCCCCTGGAACTGGGAAAACTATGCTTGCCAAGGCTATTGCGAAGGAGTCTGGAGCTGTTTTTATTAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGTGATGCTCAAAAGCTTGTGGCAGCTGTATTTAGCCTGGCCTATAAGCTCCAGCCCGCTATTATATTCATTGATGAAGTTGACAGTTTTCTTGGTCAGCGCCGTGCAACTGATCATGAGGCATTATTAAACATGAAAACTGAGTTTATGTCTTTGTGGGATGGATTTACCACAGACCAAAATGCTCGAGTGATGGTCCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCCATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAGTTCCAGATCAAAAAGAGAGGGTTGAGATATTAAAGGTGATCTTGAAGGGTGAGAGAATTGAAGACAATATTGACTTTGATCATATAGCTAGCTTGTGTGAGGGCTACACGGGTTCAGATTTATTTGAACTCTGCAAAAAAGCTGCTTATTTCCCTATTAGAGACCTGCTAGATGAAGAGACAAAAGGGAAACAGTCTCCTGCACCGAGGCCATTGTCACAGTCAGATTTAGAGAAGGTCCTTGCCACTTCAAGGAAAACGAAGGTTGCTGCAGGTGAATACAGTGGATTAACCCTACATTCGCCAAGATGGTCGGGACATCGGGAGTCAGGTGATTACCAGTTTCAAGATGCAATCAGTGAATTATCTAAGCTTGTGGTTTCTCAAATTATTAACTTCCAATCTGATGCTCAGGATTCTTAA 1173 0.4382 MAGSETKLVQELILYAASAALSCLVLFVGLRQLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDDIDVEFDSIGGLEKIKQALFELVILPLKRPELFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRATDHEALLNMKTEFMSLWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGVPDQKERVEILKVILKGERIEDNIDFDHIASLCEGYTGSDLFELCKKAAYFPIRDLLDEETKGKQSPAPRPLSQSDLEKVLATSRKTKVAAGEYSGLTLHSPRWSGHRESGDYQFQDAISELSKLVVSQIINFQSDAQDS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1547 390 SMART AAA_5 117 253 IPR003593 -
Mibi08g1547 390 Gene3D - 79 337 IPR027417 -
Mibi08g1547 390 Pfam AAA+ lid domain 273 309 IPR041569 -
Mibi08g1547 390 FunFam ATPase family AAA domain-containing protein 1 79 256 - -
Mibi08g1547 390 Pfam ATPase family associated with various cellular activities (AAA) 121 250 IPR003959 GO:0005524|GO:0016887
Mibi08g1547 390 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 16 342 - -
Mibi08g1547 390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 323 IPR027417 -
Mibi08g1547 390 ProSitePatterns AAA-protein family signature. 223 242 IPR003960 GO:0005524|GO:0016887
Mibi08g1547 390 Gene3D - 252 334 - -
Mibi08g1547 390 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Mibi08g1547 390 CDD AAA 86 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1547 Mibi-ChrMibi08 31855066 31859299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1547 38 317 Calmodulin-binding Proteins AT3G56690 33.099 3.87e-40 150