Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1536 ATGGATTTTCTTTCCTTTTGCCGCATTTCGCTCAAAGGGTTGAAGGGAGATAAACACTCAGACGCAGAGAAACCCTACTCAGCAGAGGAAGGAGGCGCAAAGGAATCGGCCGCCATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAATCCAGTGATACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGCATCCCACCGGACCAACAGAGGTTGATCTTCGCCGGGAAACAGCTGGAGGATGGCCGTACTCTTGCCGATTACAACATTCAGAAAGAGTCAACATTGCACCTTGTTCTGAGGCTTAGAGGTGGCATTATTGAGCCGTCGTTGATGGCATTGGCCAGGAAATATAATCAGGACAAGATGATCTGCCGCAAGTGTTATGCTCGTTTACACCCTCGCGCCGTCAACTGCAGGAAAAAGAAGTGTGGGCACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAA 501 0.497 MDFLSFCRISLKGLKGDKHSDAEKPYSAEEGGAKESAAMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1536 166 FunFam ubiquitin-60S ribosomal protein L40 117 166 - -
Mibi08g1536 166 Gene3D - 33 117 - -
Mibi08g1536 166 SMART ubq_7 39 110 IPR000626 GO:0005515
Mibi08g1536 166 CDD Ubl_ubiquitin 39 114 - -
Mibi08g1536 166 SUPERFAMILY Ubiquitin-like 35 114 IPR029071 -
Mibi08g1536 166 FunFam Ubiquitin-60S ribosomal L40 fusion 39 116 - -
Mibi08g1536 166 ProSiteProfiles Ubiquitin domain profile. 39 114 IPR000626 GO:0005515
Mibi08g1536 166 Gene3D - 118 166 IPR038587 -
Mibi08g1536 166 SMART Ribosomal_L40e_3 115 166 IPR001975 GO:0003735|GO:0005840|GO:0006412
Mibi08g1536 166 Pfam Ribosomal L40e family 116 165 IPR001975 GO:0003735|GO:0005840|GO:0006412
Mibi08g1536 166 PRINTS Ubiquitin signature 91 112 IPR019956 -
Mibi08g1536 166 PRINTS Ubiquitin signature 49 69 IPR019956 -
Mibi08g1536 166 PRINTS Ubiquitin signature 70 90 IPR019956 -
Mibi08g1536 166 Pfam Ubiquitin family 41 112 IPR000626 GO:0005515
Mibi08g1536 166 SUPERFAMILY Zn-binding ribosomal proteins 114 165 IPR011332 GO:0006412
Mibi08g1536 166 ProSitePatterns Ubiquitin domain signature. 65 90 IPR019954 -
Mibi08g1536 166 PANTHER UBIQUITIN 39 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1536 Mibi-ChrMibi08 31771654 31774692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1536 39 166 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 1.97e-92 263