Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1519 ATGGCTGTTAGATTTAATGTCGAAGTTGTTGGTGGTGTGTTTGGGGTCCACCAGCAGAGTCAAGGCCGAGGCATCACCATGCAGTACCTAAAAGCAGATAAGACCAGGATAGTTTTCGCCACAAAAAATAAAAGAGGATACTTTTTTTTCCCTGTGAGTATCTCTTTGATTATGGCTGTTGCTGAGAATGTTGGGGCCATAATCGGCTCTTCCGGTGAAAATTTGGAAAATCGTGTAGTGTCATCTGACTCAACTGTACCTAATGAACTGGAGAAATCGAAGCTCAAAACTGGTTCCATGGGAAATGGTATAGAAACTAATGTTCAGCCCGTCAATGGTGATCAGAATCTGAACGATGTCTTCAACAAAAACGACATCGTCTCGACTACTATTTCAGTCCCCAATAATAACCATAAAGCTCAGATGGCTCAGATGCGAAATGGATTTGAGGAAAATGGGGTCCAGTCTCAGCAGATGGTGATGAACAATGGTGCATATGGCATTAACCAGATTTCTAATGGGGTGAGAAATGGTGGAGATGACAATAGTGAGAGTTTCAAGCAAGATATGAGGGATTTGGCGGAACTATTATCGAAGTTGAATCCTATGGCTGAAGAATTTGTGCCCCCATCGCTTACTAAGAATCATGGGATCTTAGGCGGTGGGGGAGGATTTGGCTACGCTAACAATTTTCTATTACAGGCTAACTTTGGCAATGCCAATGGTCAAATTAACAGAAGGAGGAAGAATGGCTATAATCAGGGTAAGAGAAGGATCAATCATAAAATGGATGTGGAAAAGAGAGAAGAGATGATAAGGAGGACTGTTTACGTGTCTGACATTGATCATCAGGTTACTGAAGAGCAGCTCGCGGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGAGTATGTGGGGATCCAAATTCCGTTCTTCGTTTTGCCTTCATTGAGTTCACAGATGAAGAAGGTGCTAGGGCTGCTTTGAATCTATCTGGCACCATGCTTGGATATTATCCAGTGAGAGTGCTGCCTTCAAAAACTGCCATTGCACCAGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAGCGGGAAATGTGTTCAAGAACTATTTATTGCACAAATATTGACAAAAAGGTTACTCAGGCAGATGTAAAACTCTTCTTTGAGTCTCTCTGTGGAGAGGTTCATCGCTTGAGGCTTCTTGGTGATTATCATCATTCAACTCGAATTGCATTTGTTGAGTTCACAATGGCTGAAAGTGCAATTGCTGCTCTGAACTGTAGTGGTGTGATTTTGGGATCACTGCCTATCAGGGTAAGTCCATCAAAGACACCTGTCCGCTCTCGCACACCTCGTTCTCACATGCAGTGA 1380 0.4304 MAVRFNVEVVGGVFGVHQQSQGRGITMQYLKADKTRIVFATKNKRGYFFFPVSISLIMAVAENVGAIIGSSGENLENRVVSSDSTVPNELEKSKLKTGSMGNGIETNVQPVNGDQNLNDVFNKNDIVSTTISVPNNNHKAQMAQMRNGFEENGVQSQQMVMNNGAYGINQISNGVRNGGDDNSESFKQDMRDLAELLSKLNPMAEEFVPPSLTKNHGILGGGGGFGYANNFLLQANFGNANGQINRRRKNGYNQGKRRINHKMDVEKREEMIRRTVYVSDIDHQVTEEQLAALFLNCGQVVDCRVCGDPNSVLRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVHRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVRSRTPRSHMQ 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1519 459 FunFam Polyadenylate-binding protein-interacting protein 10 365 443 - -
Mibi08g1519 459 FunFam Polyadenylate-binding protein-interacting protein 11 238 351 - -
Mibi08g1519 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 371 447 IPR000504 GO:0003723
Mibi08g1519 459 CDD RRM2_CID8_like 367 448 IPR034825 -
Mibi08g1519 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 440 IPR000504 GO:0003723
Mibi08g1519 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 338 IPR000504 GO:0003723
Mibi08g1519 459 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 195 453 - -
Mibi08g1519 459 SMART rrm1_1 275 345 IPR000504 GO:0003723
Mibi08g1519 459 SMART rrm1_1 372 443 IPR000504 GO:0003723
Mibi08g1519 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 349 IPR000504 GO:0003723
Mibi08g1519 459 SUPERFAMILY RNA-binding domain, RBD 362 452 IPR035979 GO:0003676
Mibi08g1519 459 Gene3D - 236 351 IPR012677 -
Mibi08g1519 459 Gene3D - 358 455 IPR012677 -
Mibi08g1519 459 CDD RRM1_CID8_like 272 351 IPR034823 -
Mibi08g1519 459 SUPERFAMILY RNA-binding domain, RBD 245 350 IPR035979 GO:0003676
Mibi08g1519 459 Pfam Ataxin-2 C-terminal region 197 211 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1519 Mibi-ChrMibi08 31535542 31546631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1519 273 435 Eukaryotic Initiation Factors Gene Family AT1G34140 26.347 3.41e-10 59.7