Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g1518 ATGGAGCTTGTGGAGCACCGCTCACCTCGAGGATTGCTCTCTTGAGGAACGGTAGAACTTATACTATCAGACATGAGTGGTCGCTTTTCTCGCACTATTTATGTTGGCAACCTGCCCTCAGATATAAGAGAATCAGAAATTGAGGATCTGTTCTACAAGTATGGCCGCATATTGGATATTGAGTTGAAGATTCCGCCTCGACCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCTGAAGATGCAATTCGTGGTCGTGATGGCTACAATTTTGATGGCTGTCGATTAAGGGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAGGTGATCGCCGTGGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGGAGCCGTTTTGGCATCTCACGTCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCATCTGCATCGTGGCAGGATTTAAAGGATCATATGCGTAAAGCTGGTGATGTATGTTTTGCTGAGGTTTCACGTGATAGTGAAGGCACATTTGGCATTGTTGATTACACTAACTATGACGACATGAAATATGCTATTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGAGCTTATATTCGGGTGAAGAAATATGAGGCCAGTCCCACAAGGAGCCGCAGCAGGAGCCCTGGCAGAAGCAGAAGCAGAAGCCCTAAAAGGAATAGAAGTAGGTCATTGGAGCGATCTGTATCCAGGTCACCATCTAGGTCGAGATCACCATCACCGATCAAATCTAGGCCAAGATCACCATCACGTTCCAGGTCCAGGTCCAGGTCCAGGTCACAATCTGCATCACCACGCCAGGCTCGGTCAGCCAGTGGTTGA 873 0.4754 MELVEHRSPRGLLSXGTVELILSDMSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSGDRRGYGGGGGGGGGSRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYEASPTRSRSRSPGRSRSRSPKRNRSRSLERSVSRSPSRSRSPSPIKSRPRSPSRSRSRSRSRSQSASPRQARSASG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g1518 290 MobiDBLite consensus disorder prediction 272 290 - -
Mibi08g1518 290 Gene3D - 23 136 IPR012677 -
Mibi08g1518 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Mibi08g1518 290 MobiDBLite consensus disorder prediction 248 264 - -
Mibi08g1518 290 FunFam serine/arginine-rich splicing factor SR34A-like 138 215 - -
Mibi08g1518 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 202 IPR000504 GO:0003723
Mibi08g1518 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 100 IPR000504 GO:0003723
Mibi08g1518 290 SUPERFAMILY RNA-binding domain, RBD 30 208 IPR035979 GO:0003676
Mibi08g1518 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 106 IPR000504 GO:0003723
Mibi08g1518 290 MobiDBLite consensus disorder prediction 105 130 - -
Mibi08g1518 290 FunFam serine/arginine-rich splicing factor SR34A-like 26 137 - -
Mibi08g1518 290 Gene3D - 137 215 IPR012677 -
Mibi08g1518 290 CDD RRM1_SF2_plant_like 32 103 - -
Mibi08g1518 290 MobiDBLite consensus disorder prediction 216 290 - -
Mibi08g1518 290 CDD RRM2_SF2_plant_like 138 213 - -
Mibi08g1518 290 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 31 280 - -
Mibi08g1518 290 SMART rrm1_1 139 208 IPR000504 GO:0003723
Mibi08g1518 290 SMART rrm1_1 32 102 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g1518 Mibi-ChrMibi08 31531915 31535276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g1518 28 196 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 2.98e-08 52.8